DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18262 and M03D4.4

DIOPT Version :9

Sequence 1:NP_572453.1 Gene:CG18262 / 31745 FlyBaseID:FBgn0030012 Length:469 Species:Drosophila melanogaster
Sequence 2:NP_001023313.1 Gene:M03D4.4 / 177375 WormBaseID:WBGene00019751 Length:505 Species:Caenorhabditis elegans


Alignment Length:317 Identity:84/317 - (26%)
Similarity:129/317 - (40%) Gaps:59/317 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   171 LFQCDQCDRAYNTKRSLQSHRRLKHSEANGGSLDKSASERNSK-----KRKGPPKVYKCNEE--- 227
            |:.|..|..|:::...||.|.|.:|.....|..::...|.:|.     |.|.....:..:.:   
 Worm     4 LYLCRDCSGAFHSLDELQRHEREEHETVEQGDQEEDRMEDDSDELAMIKIKIEDSDFLSDTDSSQ 68

  Fly   228 -ACNQTFRTERDLRGHRWKHTGIFCDICGKPFTQSGNMMRHRQRHSGIKPHKCPECDATFYTQKE 291
             :.|.|..:|:...|.:.::.   |:.|.:.|.....:..|.:.|||.:||.|.:|...|.|::.
 Worm    69 LSMNPTTPSEKSSSGEKGRYE---CEDCHEMFAVKRELATHMRIHSGEQPHSCTQCGKEFGTRQL 130

  Fly   292 LSSHSICHTGRMPCICEVCGRPCRDRGVLTAHMRRHTGERPAKCEVCGKAFYSFHDLNVHAVSHT 356
            |..|.:.|||....:|..|.:....:|.||.|:..|:|.||.:|..|.|.|....|||.|...|.
 Worm   131 LKKHWMWHTGERSHVCPHCNKAFFQKGHLTQHLMIHSGGRPHECPQCHKTFIFKFDLNRHMKIHQ 195

  Fly   357 NLRPFVCDVCGSTFQRKKALRVHKLLHSEQRKYACKLCGK---------TFAQSGGLNAHMRSHD 412
            . |.|.|..||.:|.::..|..|.|        .||  ||         |.....||.:.:    
 Worm   196 E-RGFSCQQCGRSFLKQVMLDEHHL--------KCK--GKPSSPIRSLLTPTMKAGLESAI---- 245

  Fly   413 PARVKGAVKPLPQSVTIEVIEGKSPPTTTITMAIDLNVEEQ----------LVKQTE 459
                  ::||..:|:.:.       ..|...||..|.:::|          ||||.|
 Worm   246 ------SIKPPQESMILS-------SETIAKMAQKLLIQQQENHRNALNTLLVKQHE 289

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18262NP_572453.1 C2H2 Zn finger 224..246 CDD:275368 4/25 (16%)
C2H2 Zn finger 251..271 CDD:275368 4/19 (21%)
COG5048 <256..415 CDD:227381 51/167 (31%)
zf-H2C2_2 263..288 CDD:290200 9/24 (38%)
C2H2 Zn finger 279..327 CDD:275368 15/47 (32%)
zf-H2C2_2 320..342 CDD:290200 10/21 (48%)
C2H2 Zn finger 335..355 CDD:275368 8/19 (42%)
C2H2 Zn finger 363..383 CDD:275368 7/19 (37%)
zf-C2H2 389..411 CDD:278523 7/30 (23%)
C2H2 Zn finger 391..411 CDD:275368 7/28 (25%)
M03D4.4NP_001023313.1 C2H2 Zn finger 90..110 CDD:275368 4/19 (21%)
zf-H2C2_2 102..127 CDD:290200 9/24 (38%)
C2H2 Zn finger 118..138 CDD:275368 6/19 (32%)
C2H2 Zn finger 146..166 CDD:275368 6/19 (32%)
zf-H2C2_2 158..181 CDD:290200 10/22 (45%)
zf-C2H2 172..194 CDD:278523 8/21 (38%)
C2H2 Zn finger 174..194 CDD:275368 8/19 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

Return to query results.
Submit another query.