DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18262 and hinf-1

DIOPT Version :9

Sequence 1:NP_572453.1 Gene:CG18262 / 31745 FlyBaseID:FBgn0030012 Length:469 Species:Drosophila melanogaster
Sequence 2:NP_493579.2 Gene:hinf-1 / 173348 WormBaseID:WBGene00009553 Length:541 Species:Caenorhabditis elegans


Alignment Length:262 Identity:74/262 - (28%)
Similarity:115/262 - (43%) Gaps:30/262 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   170 MLFQC--DQCDRAYNTKRSLQSHRRLKHSEANGGSLDKSASERNSKKRKGPPKVYKCNEEACNQT 232
            ||..|  :.|...:|:...|..|  :.|.....|.:|:.....::..:|   .|:.|...||.|.
 Worm   243 MLLNCQWEDCGMPFNSLTELFDH--VGHHIDGVGDVDRIQQNFSNGDKK---VVFPCKWTACTQV 302

  Fly   233 FRTERDLRGHRWKHTG---IFCDICGKPFTQSGNMMRHRQRHSGI-------KPHKCPECDATFY 287
            ..::.:||.|...|:|   :.|..|.:.|::...:..|..|.:.:       .|:.|..|...|.
 Worm   303 ADSKANLRRHARHHSGEKVLACPFCARFFSRRDKLYDHCLRRTILMKNPEMEDPYLCKLCQKRFG 367

  Fly   288 TQKELSSHSICHTGRMPC-ICEVCGRPCR---DRGVLTAHMRRHTGERPAKCEVCGKAFYSFHDL 348
            |:|.|..|...|...:.| :|.: |..||   .|.::|.|.||   .:..||:.|.|.|::..:|
 Worm   368 TEKALCMHVTRHLVSLTCPLCSL-GLGCRAELHRHLMTKHSRR---SKDFKCDTCSKLFFTESEL 428

  Fly   349 NVHAVSHTNLRPFVCDVCGSTFQRKKALRVHKLLHSEQ---RKYACKLCGKTFAQSGGLNAHM-R 409
            |.|||.|:::. :.|..|...|:.||.|..|...|.|.   ..|.|.||.:|:.....|..|: |
 Worm   429 NRHAVYHSDVM-YSCKHCPEKFKWKKQLMKHMKEHDENFNPSPYTCHLCDRTYTTGFALGRHLTR 492

  Fly   410 SH 411
            .|
 Worm   493 QH 494

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18262NP_572453.1 C2H2 Zn finger 224..246 CDD:275368 7/21 (33%)
C2H2 Zn finger 251..271 CDD:275368 4/19 (21%)
COG5048 <256..415 CDD:227381 51/171 (30%)
zf-H2C2_2 263..288 CDD:290200 6/31 (19%)
C2H2 Zn finger 279..327 CDD:275368 17/51 (33%)
zf-H2C2_2 320..342 CDD:290200 8/21 (38%)
C2H2 Zn finger 335..355 CDD:275368 9/19 (47%)
C2H2 Zn finger 363..383 CDD:275368 7/19 (37%)
zf-C2H2 389..411 CDD:278523 8/22 (36%)
C2H2 Zn finger 391..411 CDD:275368 7/20 (35%)
hinf-1NP_493579.2 C2H2 Zn finger 299..316 CDD:275368 5/16 (31%)
C2H2 Zn finger 324..344 CDD:275368 4/19 (21%)
C2H2 Zn finger 359..379 CDD:275368 7/19 (37%)
C2H2 Zn finger 385..406 CDD:275368 7/21 (33%)
C2H2 Zn finger 415..435 CDD:275368 9/19 (47%)
C2H2 Zn finger 442..462 CDD:275368 7/19 (37%)
C2H2 Zn finger 473..494 CDD:275368 7/20 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

Return to query results.
Submit another query.