DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18262 and LOC110437786

DIOPT Version :9

Sequence 1:NP_572453.1 Gene:CG18262 / 31745 FlyBaseID:FBgn0030012 Length:469 Species:Drosophila melanogaster
Sequence 2:XP_017211305.1 Gene:LOC110437786 / 110437786 -ID:- Length:578 Species:Danio rerio


Alignment Length:497 Identity:122/497 - (24%)
Similarity:180/497 - (36%) Gaps:183/497 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 QDVVEVQGNEEL------------------HEE--------LAKEASPDLEEEEEEKEEGSK--R 110
            :||...:.||||                  ||:        :.||.:.:|.|.||:.:.|.:  .
Zfish     9 EDVWIKEENEELRIKEESEGLSITEVFTVKHEDPEEQTGLMVLKEETRELNEIEEKDQCGKQFDL 73

  Fly   111 QHYQRAAAMKNTLVE-----------------TREDLLDIELDWTGGEQ---------------- 142
            ...:.::..|||..|                 :|:..|::.:....||:                
Zfish    74 MTDEPSSVAKNTSCEGAEKTKHFPCHQCGKSFSRKHGLNLHMRIHTGEKPYSCTVCGKSFSAKSG 138

  Fly   143 -SEHNETHEEEE-------GESDDDDTKDS----NDTKDMLFQCDQCDRAYNTKRSLQSHRRLKH 195
             :.|...|..|:       |:|..:.::.:    ..|.:..|.|..|::::|.|:.|:.|.|:..
Zfish   139 FNTHMRIHTGEKPYSCTVCGKSFTEKSRFNIHMRIHTGERPFSCTVCEKSFNEKKKLEIHMRIHT 203

  Fly   196 SEANGGSLDKSASERNSKKRKGPPKVYKCNEEACNQTFRTERDLRGHRWKHTG---IFCDICGKP 257
            .|                      |.|.|.|  |.::|..:..|..|...|||   ..|..|||.
Zfish   204 GE----------------------KPYSCTE--CGKSFSEKSKLGMHMRIHTGEKPFACQHCGKR 244

  Fly   258 FTQSGNMMRHRQRHSGIKPHKCPECDATFYTQKELSSHSICHTGRMP------------------ 304
            |:|..::..|.:.|:|.|||.|.:|..:|..:..|::|.|.|||..|                  
Zfish   245 FSQMVSLKSHFRVHTGEKPHTCQQCGKSFAQKSTLTAHIIRHTGEKPFPCDQCEKRYVCKHHLKR 309

  Fly   305 ----------------------------------------------CI----------------- 306
                                                          ||                 
Zfish   310 HKRIHAKHKYFICDQCGSSFKLKQNFDQHMKNHAEKSFICDQCGRNCISESGLESHMKVHTGEKP 374

  Fly   307 --CEVCGRPCRDRGVLTAHMRRHTGERPAKCEVCGKAFYSFHDLNVHAVSHTNLRPFVCDVCGST 369
              |..||:.|..:..||.|||.||||:|.:|..|||.|.:.:.|..|...||..:|..|..||..
Zfish   375 YSCTECGKSCSHKHNLTVHMRVHTGEKPFQCHHCGKRFVTSYLLKSHMNFHTGKKPHTCRPCGKR 439

  Fly   370 FQRKKALRVHKLLHSEQRKYACKLCGKTFAQSGGLNAHMRSH 411
            |.:..||:||..:||.:|.|.|..|||.|||..||..|||:|
Zfish   440 FVQYSALKVHLRVHSGERPYTCAQCGKGFAQKHGLYVHMRTH 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18262NP_572453.1 C2H2 Zn finger 224..246 CDD:275368 6/21 (29%)
C2H2 Zn finger 251..271 CDD:275368 7/19 (37%)
COG5048 <256..415 CDD:227381 70/239 (29%)
zf-H2C2_2 263..288 CDD:290200 9/24 (38%)
C2H2 Zn finger 279..327 CDD:275368 21/130 (16%)
zf-H2C2_2 320..342 CDD:290200 14/21 (67%)
C2H2 Zn finger 335..355 CDD:275368 7/19 (37%)
C2H2 Zn finger 363..383 CDD:275368 8/19 (42%)
zf-C2H2 389..411 CDD:278523 13/21 (62%)
C2H2 Zn finger 391..411 CDD:275368 12/19 (63%)
LOC110437786XP_017211305.1 COG5048 91..511 CDD:227381 103/415 (25%)
C2H2 Zn finger 98..118 CDD:275368 2/19 (11%)
C2H2 Zn finger 126..146 CDD:275368 1/19 (5%)
C2H2 Zn finger 154..174 CDD:275368 2/19 (11%)
C2H2 Zn finger 182..202 CDD:275368 7/19 (37%)
C2H2 Zn finger 210..230 CDD:275368 6/21 (29%)
C2H2 Zn finger 238..258 CDD:275368 7/19 (37%)
C2H2 Zn finger 266..286 CDD:275368 6/19 (32%)
C2H2 Zn finger 294..314 CDD:275368 0/19 (0%)
C2H2 Zn finger 322..342 CDD:275368 0/19 (0%)
C2H2 Zn finger 349..369 CDD:275368 2/19 (11%)
C2H2 Zn finger 377..397 CDD:275368 9/19 (47%)
C2H2 Zn finger 405..425 CDD:275368 7/19 (37%)
C2H2 Zn finger 433..453 CDD:275368 8/19 (42%)
C2H2 Zn finger 461..481 CDD:275368 12/19 (63%)
C2H2 Zn finger 489..509 CDD:275368
C2H2 Zn finger 518..538 CDD:275368
C2H2 Zn finger 544..560 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.