DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10959 and ranshi

DIOPT Version :10

Sequence 1:NP_572451.1 Gene:CG10959 / 31743 FlyBaseID:FBgn0030010 Length:443 Species:Drosophila melanogaster
Sequence 2:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster


Alignment Length:388 Identity:89/388 - (22%)
Similarity:141/388 - (36%) Gaps:139/388 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 NRFQLVCLLCDMKHFGF-----------------EDFARHIRNVHFDKQGRPLTKTV-------T 74
            ||....|..|..:...|                 |||.|..       |..|  |:|       .
  Fly    49 NRLCASCQTCLQQAISFRERCLEVQRELLHSQDDEDFLRIC-------QESP--KSVLEQEELEL 104

  Fly    75 GLGRLAREEQEFQGVSAEPLAVDSFKKEYLPNEDVLSEEEDAEQELGLEQDEGNPLRIMVLGGKQ 139
            .|..::.|.:....::..|:....||.     ||:|:|.:       :.:||.|        .:.
  Fly   105 DLAEISIEVERLDDLNEGPIQSSGFKV-----EDILNESK-------INEDEPN--------NED 149

  Fly   140 SVDEETID-TMWQPDHDSSSASVNEGCALEALLGVENPQDYQPDEDGEEHQSVFKKQRQPKDYN- 202
            .:|...:| .:::.|.:                 |:..|:.:.|.:..:.:   :.:|.|:|.| 
  Fly   150 DIDYSEMDYLIYESDTE-----------------VDAKQELKSDSENPKKR---RNRRNPRDSNR 194

  Fly   203 ---CPHCDRRYTTQKYLNTHLKMSHPFPQAFKCVDCKATFDVDRALAQHRRKEHTEFACQLCDKV 264
               |..|          ..|:|....|     .:.||          :||..:  ||.|:.|:..
  Fly   195 TFFCEEC----------GNHIKDRISF-----ILHCK----------RHRGVK--EFGCEFCEDR 232

  Fly   265 FKSSRSLLRHVQGHSGARTFKCEHENCGKSFVNQHNLTSHRRVHSEERNYVCELCGYRSRYREAL 329
            |.:...|.||::.|:|.:.|||.|  |.:||.:                       |.:|.:   
  Fly   233 FCTPAELKRHIRKHTGEKPFKCRH--CSRSFSD-----------------------YSTRLK--- 269

  Fly   330 IVHRRTHTGEKPFQCQTCARRFASKSLLNEHQAMHSTEKPYKCDKCDSAFSRPKALYHHKHLH 392
              |.||||.|:||.|:.|...|.:..:|..|..:|:.||.::||.||..|||    |.|...|
  Fly   270 --HERTHTNERPFVCKECNNAFTTSYILKNHMLVHTGEKAFRCDLCDKLFSR----YTHLTTH 326

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10959NP_572451.1 C2H2 Zn finger 232..253 CDD:275368 4/20 (20%)
COG5048 <258..416 CDD:227381 43/135 (32%)
C2H2 Zn finger 258..278 CDD:275368 6/19 (32%)
C2H2 Zn finger 289..308 CDD:275368 3/18 (17%)
C2H2 Zn finger 316..336 CDD:275368 4/19 (21%)
C2H2 Zn finger 344..364 CDD:275368 5/19 (26%)
C2H2 Zn finger 372..392 CDD:275368 9/19 (47%)
C2H2 Zn finger 400..420 CDD:275368
ranshiNP_649824.1 zf-AD 5..76 CDD:462262 5/26 (19%)
C2H2 Zn finger 198..218 CDD:275368 7/44 (16%)
COG5048 222..>276 CDD:227381 23/85 (27%)
C2H2 Zn finger 226..246 CDD:275368 6/19 (32%)
zf-H2C2_2 238..262 CDD:463886 11/25 (44%)
C2H2 Zn finger 254..274 CDD:275368 9/49 (18%)
C2H2 Zn finger 282..302 CDD:275368 5/19 (26%)
zf-H2C2_2 295..319 CDD:463886 10/23 (43%)
C2H2 Zn finger 310..328 CDD:275368 10/21 (48%)
Blue background indicates that the domain is not in the aligned region.

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