DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10959 and sna

DIOPT Version :9

Sequence 1:NP_572451.1 Gene:CG10959 / 31743 FlyBaseID:FBgn0030010 Length:443 Species:Drosophila melanogaster
Sequence 2:NP_476732.1 Gene:sna / 34908 FlyBaseID:FBgn0003448 Length:390 Species:Drosophila melanogaster


Alignment Length:387 Identity:98/387 - (25%)
Similarity:133/387 - (34%) Gaps:120/387 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 FKKEYLPNEDVLSEEEDAEQELGLEQDEGNPLRIMVLGGKQSVDEETIDTMWQ------------ 151
            |.:|.||..:.|:..:|::    ..||:...|.:     |:..||||.|  :|            
  Fly    17 FVEERLPQTEALALTKDSQ----FAQDQPQDLSL-----KRGRDEETQD--YQQPEPKRDYVLNL 70

  Fly   152 ---PDHDSSSASVNEGCALEALLGVENPQDYQPDE------------------------------ 183
               |:.:|||:|  ..|.|...:   ..|||.|.|                              
  Fly    71 SKTPERNSSSSS--NSCLLSPPV---EAQDYLPTEIHMRGLTAGTTGYTTATPTTINPFQSAFVM 130

  Fly   184 ------------DGEEH--------------QSVFKKQRQPKDYNCPHCDRRYTTQKYLNTHLKM 222
                        ..:.|              |||:..| |....:.|..|.. |..:..:..::.
  Fly   131 AAGCNPISALWSSYQPHLAAFPSPASSMASPQSVYSYQ-QMTPPSSPGSDLE-TGSEPEDLSVRN 193

  Fly   223 SHPFPQAFKCVD-------------------CKATFDVDRALAQHRRKEHTEFACQLCDKVFKSS 268
            ..|.|..|...|                   ..|......::|.:..|.: .|.|..|.|::.:|
  Fly   194 DIPLPALFHLFDEAKSSSSGASVSSSSGYSYTPAMSASSASVAANHAKNY-RFKCDECQKMYSTS 257

  Fly   269 RSLLRHVQGHSGA-------RTFKCEHENCGKSFVNQHNLTSHRRVHSEERNYVCELCGYRSRYR 326
            ..|.:|.|.|..|       :|..|  |.|||.:.....|..|.|.|:....  |.:||......
  Fly   258 MGLSKHRQFHCPAAECNQEKKTHSC--EECGKLYTTIGALKMHIRTHTLPCK--CPICGKAFSRP 318

  Fly   327 EALIVHRRTHTGEKPFQCQTCARRFASKSLLNEHQAMHSTEKPYKCDKCDSAFSRPKALYHH 388
            ..|..|.|||||||||||..|.|.||.:|.|..||..|...|.|.|..|..:|||...|..|
  Fly   319 WLLQGHIRTHTGEKPFQCPDCPRSFADRSNLRAHQQTHVDVKKYACQVCHKSFSRMSLLNKH 380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10959NP_572451.1 C2H2 Zn finger 232..253 CDD:275368 4/39 (10%)
COG5048 <258..416 CDD:227381 53/138 (38%)
C2H2 Zn finger 258..278 CDD:275368 7/19 (37%)
C2H2 Zn finger 289..308 CDD:275368 7/18 (39%)
C2H2 Zn finger 316..336 CDD:275368 6/19 (32%)
zf-H2C2_2 328..353 CDD:290200 16/24 (67%)
C2H2 Zn finger 344..364 CDD:275368 9/19 (47%)
zf-H2C2_2 357..381 CDD:290200 9/23 (39%)
C2H2 Zn finger 372..392 CDD:275368 7/17 (41%)
C2H2 Zn finger 400..420 CDD:275368
snaNP_476732.1 C2H2 Zn finger 308..328 CDD:275368 6/19 (32%)
zf-H2C2_2 321..344 CDD:290200 15/22 (68%)
zf-C2H2 334..356 CDD:278523 11/21 (52%)
C2H2 Zn finger 336..356 CDD:275368 9/19 (47%)
zf-H2C2_2 348..373 CDD:290200 9/24 (38%)
C2H2 Zn finger 364..380 CDD:275368 6/15 (40%)
C2H2 Zn finger 247..267 CDD:275368 7/19 (37%)
C2H2 Zn finger 282..302 CDD:275368 8/21 (38%)
zf-C2H2 306..328 CDD:278523 6/23 (26%)
COG5048 307..>356 CDD:227381 24/50 (48%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 54 1.000 Inparanoid score I1809
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24388
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.150

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