DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10959 and tra-4

DIOPT Version :10

Sequence 1:NP_572451.1 Gene:CG10959 / 31743 FlyBaseID:FBgn0030010 Length:443 Species:Drosophila melanogaster
Sequence 2:NP_001370327.1 Gene:tra-4 / 180575 WormBaseID:WBGene00018740 Length:543 Species:Caenorhabditis elegans


Alignment Length:358 Identity:82/358 - (22%)
Similarity:134/358 - (37%) Gaps:101/358 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 CLLCDMKHFGFEDFARHIRNVHFDKQGRPLTKTVTGLGRLAREEQEFQGVSAEPLAVDSFKKEYL 104
            |..|..:......:.||:|:.|.|                                        |
 Worm   220 CKKCKNRFIEKNIYERHLRDKHPD----------------------------------------L 244

  Fly   105 PNEDVLSEEEDAEQELGLEQDEGNPLRIMVLGGKQSVDEETIDTMWQPDHDSSSASV---NEGCA 166
            ..|.:..:||:.|.: .||:.|.|.:..:..||....:.|    :.||..|.:...:   |.|  
 Worm   245 YEEYIREQEEEVELQ-RLEEIEANRIEELQTGGFIPPENE----ISQPSEDPNYIPLPGENNG-- 302

  Fly   167 LEALLGVENPQDYQPDEDG--EEHQSVFKKQRQPKDYNCPHCDRRYTTQKYLNTHLKMSH----P 225
                 |:....||.    |  ::.:..:||:..|:   ||.||:|:..:..|..|....|    .
 Worm   303 -----GLVPRFDYY----GRIKQLKRPYKKKVSPQ---CPFCDKRFRNEFSLKKHFAKKHEEMVE 355

  Fly   226 FPQ---AFKCV---------DCKATF-----------DVDRALAQHRRKEH----TEFACQLCDK 263
            |.|   .||||         ||:.|:           ..|..|..||:|.|    :.|.|..|:.
 Worm   356 FQQCLKCFKCVENDAEMANHDCELTYVCFECTPIRNLCTDNRLLNHRKKFHRGANSGFRCSFCNM 420

  Fly   264 VFKSSRSLLRHVQ-GHSGARTFKCEHENCGKSFVNQHNLTSHRRVHSEERNYVCELCGYRSRYRE 327
            .|.:.|.|.:|.: .|...:||:|..  |.:.|:::..:.:|.|:|:....:.|::|.:|:....
 Worm   421 KFLTPRKLRKHKKMSHVFTKTFQCHF--CEEIFISEVAVMTHERMHTGIIKFECKVCDFRANRYT 483

  Fly   328 ALIVHRRTHTGEKPFQCQTCARRFASKSLLNEH 360
            |:..|:|...|   :.|..|..|.|....:..|
 Worm   484 AMEEHKRDEHG---YVCAICHERHAEYPEMKHH 513

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10959NP_572451.1 C2H2 Zn finger 232..253 CDD:275368 10/40 (25%)
COG5048 <258..416 CDD:227381 27/104 (26%)
C2H2 Zn finger 258..278 CDD:275368 6/20 (30%)
C2H2 Zn finger 289..308 CDD:275368 4/18 (22%)
C2H2 Zn finger 316..336 CDD:275368 6/19 (32%)
C2H2 Zn finger 344..364 CDD:275368 5/17 (29%)
C2H2 Zn finger 372..392 CDD:275368
C2H2 Zn finger 400..420 CDD:275368
tra-4NP_001370327.1 COG5236 <329..>519 CDD:227561 51/190 (27%)
C2H2 Zn finger 415..436 CDD:275368 6/20 (30%)
C2H2 Zn finger 444..464 CDD:275368 5/21 (24%)
C2H2 Zn finger 472..490 CDD:275368 5/17 (29%)
Blue background indicates that the domain is not in the aligned region.

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