DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Smox and Smad5

DIOPT Version :9

Sequence 1:NP_001285006.1 Gene:Smox / 31738 FlyBaseID:FBgn0025800 Length:486 Species:Drosophila melanogaster
Sequence 2:NP_067724.1 Gene:Smad5 / 59328 RGDID:620158 Length:465 Species:Rattus norvegicus


Alignment Length:509 Identity:266/509 - (52%)
Similarity:328/509 - (64%) Gaps:73/509 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLPFTPQVVKRLLALKKGNEDNSVEGKWSEKAVKNLVKKI-KKNSQLEELERAISTQNCQTRCVT 64
            :..||...|||||..|:|:|    |.||:||||..||||: ||...:||||:|:|:....::|||
  Rat     7 LFSFTSPAVKRLLGWKQGDE----EEKWAEKAVDALVKKLKKKKGAMEELEKALSSPGQPSKCVT 67

  Fly    65 VPRSKPAPAGEHLRKGLPHVIYCRLWRWPDLQSQNELKPLDHCEYAFHLRKEEICINPYHYKKIE 129
            :|||.........|||||||||||:||||||||.:||||||.||:.|..:::|:||||||||::|
  Rat    68 IPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLDICEFPFGSKQKEVCINPYHYKRVE 132

  Fly   130 LSILVPKSLP-----TPPDS-IVDY-PLDNHTHQIPNNTDYNAAIIRSASLSPPQYMELGGAGPV 187
            ..:|.|..:|     .|..| :|.: .|.::...:|.|..:            |.......:.|.
  Rat   133 SPVLPPVLVPRHNEFNPQHSLLVQFRNLSHNEPHMPQNATF------------PDSFHQPNSTPF 185

  Fly   188 SVSSSASSTPATAAGGGGGPSSS----SSSSSSAASAYQQQQQQLSFGQNMDSQSSVLSVGSSIP 248
            .:|.::...|:        |:||    |.:||...|.:|                        :|
  Rat   186 PLSPNSPYPPS--------PASSTYPNSPASSGPGSPFQ------------------------LP 218

  Fly   249 NTGTPPPGYMSED-------GDPIDPNDNMNMSRLTP---PADAAPVMYHEPAFWCSISYYELNT 303
             ..||||.||..|       ..|:|.::|| :.::.|   ..|..||.|.||..||||.|||||.
  Rat   219 -ADTPPPAYMPPDDQMGQDNSQPMDTSNNM-IPQIMPSISSRDVQPVAYEEPKHWCSIVYYELNN 281

  Fly   304 RVGETFHASQPSITVDGFTDPSNSE-RFCLGLLSNVNRNEVVEQTRRHIGKGVRLYYIGGEVFAE 367
            ||||.||||..|:.|||||||:|:: |||||||||||||..:|.|||||||||.|||:||||:||
  Rat   282 RVGEAFHASSTSVLVDGFTDPANNKSRFCLGLLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAE 346

  Fly   368 CLSDSSIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALLSQSVSQGFEAVYQLTRMCT 432
            |||||||||||.|||..:|:||.||||||..|:||||||||||.||:|||:.||||||:||:|||
  Rat   347 CLSDSSIFVQSRNCNFHHGFHPTTVCKIPSSCSLKIFNNQEFAQLLAQSVNHGFEAVYELTKMCT 411

  Fly   433 IRMSFVKGWGAEYRRQTVTSTPCWIELHLNGPLQWLDRVLTQMGSPRLPCSSMS 486
            |||||||||||||.||.|||||||||:||:|||||||:||||||||..|.||:|
  Rat   412 IRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPLNPISSVS 465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmoxNP_001285006.1 MH1_R-SMAD 7..130 CDD:199812 70/123 (57%)
MH2_SMAD_2_3 285..475 CDD:199826 148/190 (78%)
Smad5NP_067724.1 MH1_SMAD_1_5_9 10..133 CDD:199814 72/126 (57%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 163..243 23/124 (19%)
MH2_SMAD_1_5_9 265..465 CDD:199822 155/199 (78%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3701
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D274383at33208
OrthoFinder 1 1.000 - - FOG0000630
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X373
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.820

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