DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Smox and Smad4

DIOPT Version :9

Sequence 1:NP_001285006.1 Gene:Smox / 31738 FlyBaseID:FBgn0025800 Length:486 Species:Drosophila melanogaster
Sequence 2:NP_062148.1 Gene:Smad4 / 50554 RGDID:3033 Length:552 Species:Rattus norvegicus


Alignment Length:545 Identity:188/545 - (34%)
Similarity:275/545 - (50%) Gaps:97/545 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 VVKRLLALKKGNEDNSVEGKWSEKAVKNLVKKIK-KNSQLEELERAISTQNCQ-TRCVTVPRSKP 70
            :|..|:..::|.|..:    ::::|:::||||:| |..:|:.|..||:|.... ::|||:.|:..
  Rat    19 IVHSLMCHRQGGESET----FAKRAIESLVKKLKEKKDELDSLITAITTNGAHPSKCVTIQRTLD 79

  Fly    71 APAGEHLRKGLPHVIYCRLWRWPDLQSQNELKPLDHCEYAFHLRKEEICINPYHYKK-----IEL 130
            .......|||.|||||.||||||||. :||||.:.:|:|||.|:.:.:|:|||||::     |:|
  Rat    80 GRLQVAGRKGFPHVIYARLWRWPDLH-KNELKHVKYCQYAFDLKCDSVCVNPYHYERVVSPGIDL 143

  Fly   131 SILVPKSLPTPPDSIV------DY------PLDNHTHQI----PNNTDYNAAIIRSASLSPPQYM 179
            |.|..:| ..||..:|      |:      |.:.|:.|.    |:|..........|.|:|.:..
  Rat   144 SGLTLQS-NAPPSMLVKDEYVHDFEGQPSLPTEGHSIQTIQHPPSNRASTETYSAPALLAPSESN 207

  Fly   180 ELGGAGPVSVSSSASSTPATAAGGGGGPSSSSSSSSSAASAYQQQQQQLSFGQNMDSQSSVLSVG 244
            ........::..:::|.||:...|     |.|......||..|..|||..|    .:|.:.....
  Rat   208 ATSTTNFPNIPVASTSQPASILAG-----SHSEGLLQIASGPQPGQQQNGF----TAQPATYHHN 263

  Fly   245 SSIPNTGTPPPGYM-----SEDG-----DPIDPNDN-----MNMSRLTPPADAAPVMYHEPAFWC 294
            |:...||:....|.     .::|     .|:.|:..     .|.....||....|.    |.:||
  Rat   264 STTTWTGSRTAPYTPNLPHHQNGHLQHHPPMPPHPGHYWPVHNELAFQPPISNHPA----PEYWC 324

  Fly   295 SISYYELNTRVGETFH--ASQPSITVDGFTDPSNSERFCLGLLSNVNRNEVVEQTRRHIGKGVRL 357
            ||:|:|::.:|||||.  :|.|.:||||:.|||..:|||||.||||:|.|.:|:.|.||||||:|
  Rat   325 SIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERARLHIGKGVQL 389

  Fly   358 YYIG-GEVFAECLSDSSIFVQSPNCNQRYGWHPA-TVCKIPPGCNLKIFNNQE------------ 408
            ...| |:|:..||||.::||||...::..|..|. .|.||.|...:|:|:.::            
  Rat   390 ECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQAATA 454

  Fly   409 -----------------------FAALLSQSVSQGFEAVYQLTRMCTIRMSFVKGWGAEYRRQTV 450
                                   .|..:|.|.:.|. .|..|.|:|.:|||||||||.:|.||::
  Rat   455 QAAAAAQAAAVAGNIPGPGSVGGIAPAISLSAAAGI-GVDDLRRLCILRMSFVKGWGPDYPRQSI 518

  Fly   451 TSTPCWIELHLNGPLQWLDRVLTQM 475
            ..||||||:||:..||.||.||..|
  Rat   519 KETPCWIEIHLHRALQLLDEVLHTM 543

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmoxNP_001285006.1 MH1_R-SMAD 7..130 CDD:199812 52/128 (41%)
MH2_SMAD_2_3 285..475 CDD:199826 94/228 (41%)
Smad4NP_062148.1 Mediates interaction with ZBTB7A. /evidence=ECO:0000250|UniProtKB:Q13485 1..322 94/321 (29%)
MH1_SMAD_4 14..138 CDD:199816 51/123 (41%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 167..193 5/25 (20%)
SAD 275..320 8/48 (17%)
MH2_SMAD_4 320..541 CDD:199823 93/221 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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