DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Smox and smad1

DIOPT Version :9

Sequence 1:NP_001285006.1 Gene:Smox / 31738 FlyBaseID:FBgn0025800 Length:486 Species:Drosophila melanogaster
Sequence 2:NP_001007481.1 Gene:smad1 / 493211 XenbaseID:XB-GENE-1018193 Length:464 Species:Xenopus tropicalis


Alignment Length:514 Identity:269/514 - (52%)
Similarity:326/514 - (63%) Gaps:83/514 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLPFTPQVVKRLLALKKGNEDNSVEGKWSEKAVKNLVKKI-KKNSQLEELERAISTQNCQTRCVT 64
            :..||...|||||..|:|:|    |.||:||||..||||: ||...:||||:|:|.....:.|||
 Frog     6 LFSFTSPAVKRLLGWKQGDE----EEKWAEKAVDALVKKLKKKKGAMEELEKALSCPGQPSNCVT 66

  Fly    65 VPRSKPAPAGEHLRKGLPHVIYCRLWRWPDLQSQNELKPLDHCEYAFHLRKEEICINPYHYKKIE 129
            :|||.........|||||||||||:||||||||.:|||||:.|||.|..:::|:||||||||::|
 Frog    67 IPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLECCEYPFGSKQKEVCINPYHYKRVE 131

  Fly   130 LSILVPKSLP-----TPPDSIVDY-----PLDNHTHQIPNNTDYNAAIIRSASLSPPQYMELGG- 183
            ..:|.|..:|     .|..|::..     |.:.|   :|:|..:           |..:.:... 
 Frog   132 SPVLPPVLVPRHSEYNPQHSLLAQFRNLEPSEPH---MPHNATF-----------PDSFQQPNSH 182

  Fly   184 AGPVSVSSSASSTPATAAGGGGGPSSS---SSSSSSAASAYQQQQQQLSFGQNMDSQSSVLSVGS 245
            ..|.|.:||..::|        |.||:   |.:||...|.:|                       
 Frog   183 PFPHSPNSSYPNSP--------GSSSTYPHSPASSDPGSPFQ----------------------- 216

  Fly   246 SIPNTGTPPPGYM-------SEDGDPID-----PNDNMNMSRLTPPADAAPVMYHEPAFWCSISY 298
             || ..||||.||       .::..|:|     ||...:::|    ||...|.|.||..||||.|
 Frog   217 -IP-ADTPPPAYMPPEDQMTQDNSQPMDTNMMVPNIPQDINR----ADVQAVAYEEPKHWCSIVY 275

  Fly   299 YELNTRVGETFHASQPSITVDGFTDPSNS-ERFCLGLLSNVNRNEVVEQTRRHIGKGVRLYYIGG 362
            ||||.||||.||||..|:.|||||||||: .|||||||||||||..:|.|||||||||.|||:||
 Frog   276 YELNNRVGEAFHASSTSVLVDGFTDPSNNRNRFCLGLLSNVNRNSTIENTRRHIGKGVHLYYVGG 340

  Fly   363 EVFAECLSDSSIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALLSQSVSQGFEAVYQL 427
            ||:|||||||||||||.|||..:|:||.||||||.||:||||||||||.||:|||:.|||.||:|
 Frog   341 EVYAECLSDSSIFVQSRNCNFHHGFHPTTVCKIPSGCSLKIFNNQEFAQLLAQSVNHGFETVYEL 405

  Fly   428 TRMCTIRMSFVKGWGAEYRRQTVTSTPCWIELHLNGPLQWLDRVLTQMGSPRLPCSSMS 486
            |:||||||||||||||||.||.|||||||||:||:|||||||:||||||||..|.||:|
 Frog   406 TKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPHNPISSVS 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmoxNP_001285006.1 MH1_R-SMAD 7..130 CDD:199812 70/123 (57%)
MH2_SMAD_2_3 285..475 CDD:199826 149/190 (78%)
smad1NP_001007481.1 MH1_SMAD_1_5_9 9..132 CDD:199814 72/126 (57%)
FAM70 <132..229 CDD:373433 31/143 (22%)
MH2_SMAD_1_5_9 264..464 CDD:199822 156/199 (78%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D274383at33208
OrthoFinder 1 1.000 - - FOG0000630
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X373
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.920

Return to query results.
Submit another query.