DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Smox and smad9

DIOPT Version :9

Sequence 1:NP_001285006.1 Gene:Smox / 31738 FlyBaseID:FBgn0025800 Length:486 Species:Drosophila melanogaster
Sequence 2:NP_001007479.1 Gene:smad9 / 493210 XenbaseID:XB-GENE-484686 Length:466 Species:Xenopus tropicalis


Alignment Length:507 Identity:263/507 - (51%)
Similarity:323/507 - (63%) Gaps:71/507 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLPFTPQVVKRLLALKKGNEDNSVEGKWSEKAVKNLVKKI-KKNSQLEELERAISTQNCQTRCVT 64
            :..||...|||||..|:|:|    |.||:||||.:||||: ||...:||||||:|.....::|||
 Frog    10 LFSFTSPAVKRLLGWKQGDE----EEKWAEKAVDSLVKKLKKKKGAMEELERALSCPGQPSKCVT 70

  Fly    65 VPRSKPAPAGEHLRKGLPHVIYCRLWRWPDLQSQNELKPLDHCEYAFHLRKEEICINPYHYKKIE 129
            :|||.........|||||||||||:||||||||.:||||::.||:.|..:::::|||||||:::|
 Frog    71 IPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPMECCEFPFGSKQKDVCINPYHYRRVE 135

  Fly   130 LSILVPKSLPTPPDSIVDYPLDNHTHQIPNNTDYN-----AAIIRSASLSPPQYMELGGAGPVSV 189
            ..:|.|.                   .:|.::::|     .|..|:.||:....|......|.|.
 Frog   136 TPVLPPV-------------------LVPRHSEFNPQLSLLAKFRNTSLNNEPLMPHNATFPESF 181

  Fly   190 SSSASSTPATAAGGGGGPSSSSSSSSSAASAYQQQQQQLSFGQNMDSQSSVLSVGSSIPNTGTPP 254
            ......||               .|||.::.:.|....:.:   .||..|....||....|.|||
 Frog   182 QQQPPCTP---------------FSSSPSNIFPQSPTTVGY---PDSPQSSADPGSPYQITETPP 228

  Fly   255 PGYMSEDGDPIDPNDNMNMSRLTPPADAA--------------PVMYHEPAFWCSISYYELNTRV 305
            |.|.:.|   |..|.|      .|.||.|              ||.|.||..|||::|||||.||
 Frog   229 PPYNAPD---IQGNQN------RPTADPAACQLVLSALNRDFRPVCYEEPLHWCSVAYYELNNRV 284

  Fly   306 GETFHASQPSITVDGFTDPSNSE-RFCLGLLSNVNRNEVVEQTRRHIGKGVRLYYIGGEVFAECL 369
            ||||.||..|:.:||||||||:: |||||||||||||..:|.|||||||||.|||:||||:|||:
 Frog   285 GETFQASSRSVLIDGFTDPSNNKNRFCLGLLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECV 349

  Fly   370 SDSSIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALLSQSVSQGFEAVYQLTRMCTIR 434
            |||||||||.|||.::|:||:||||||.||:|||||||.||.||||||:||||.||:||:|||||
 Frog   350 SDSSIFVQSRNCNYQHGFHPSTVCKIPSGCSLKIFNNQLFAQLLSQSVNQGFEVVYELTKMCTIR 414

  Fly   435 MSFVKGWGAEYRRQTVTSTPCWIELHLNGPLQWLDRVLTQMGSPRLPCSSMS 486
            |||||||||||.||.|||||||||:||:|||||||:||||||||..|.||:|
 Frog   415 MSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPHNPISSVS 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmoxNP_001285006.1 MH1_R-SMAD 7..130 CDD:199812 67/123 (54%)
MH2_SMAD_2_3 285..475 CDD:199826 147/190 (77%)
smad9NP_001007479.1 MH1_SMAD_1_5_9 13..136 CDD:199814 69/126 (55%)
PRK10263 <137..>249 CDD:236669 35/157 (22%)
MH2_SMAD_1_5_9 266..466 CDD:199822 154/199 (77%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D274383at33208
OrthoFinder 1 1.000 - - FOG0000630
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X373
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.920

Return to query results.
Submit another query.