DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Smox and smad9

DIOPT Version :9

Sequence 1:NP_001285006.1 Gene:Smox / 31738 FlyBaseID:FBgn0025800 Length:486 Species:Drosophila melanogaster
Sequence 2:NP_001315428.1 Gene:smad9 / 445564 ZFINID:ZDB-GENE-031014-1 Length:466 Species:Danio rerio


Alignment Length:504 Identity:274/504 - (54%)
Similarity:331/504 - (65%) Gaps:65/504 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLPFTPQVVKRLLALKKGNEDNSVEGKWSEKAVKNLVKKI-KKNSQLEELERAISTQNCQTRCVT 64
            :..||...|||||..|:|:|    |.||:||||.:||||: ||...:||||:|:|.....::|||
Zfish    10 LFSFTSPAVKRLLGWKQGDE----EEKWAEKAVDSLVKKLKKKKGAMEELEKALSCPGQPSKCVT 70

  Fly    65 VPRSKPAPAGEHLRKGLPHVIYCRLWRWPDLQSQNELKPLDHCEYAFHLRKEEICINPYHYKKIE 129
            :|||.........|||||||||||:||||||||.:|||.||.||:.|..:::|||||||||:::|
Zfish    71 IPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKALDCCEFPFGSKQKEICINPYHYRRVE 135

  Fly   130 LSILVPKSLPTPPDSIVDYPLDNHTHQIPNNTDYN-----AAIIRSASL--SP--PQYMELGGAG 185
            ..:|.|.                   .:|.::::|     .|..|:|||  .|  ||......:.
Zfish   136 TPVLPPV-------------------LVPRHSEFNPQHSLLAKFRNASLHNEPLMPQNATFPDSF 181

  Fly   186 PVSVSSSASSTPATAAGGGGGPSSSSSSSSSAASAYQQQQQQLSFGQNMDSQSSVLSVGSSIPNT 250
            |....||.||:|           |||.:.|.||.::.            :|.||....||....|
Zfish   182 PAMPCSSFSSSP-----------SSSLNPSPAAHSFP------------NSPSSATEPGSPYQIT 223

  Fly   251 G-TPPPGYM------SEDGDPIDPNDNMNMSRLTPPADAAPVMYHEPAFWCSISYYELNTRVGET 308
            . ||||.|.      |||..|.:.::| .:....|..|..||.|.||.:|||::|||||.|||||
Zfish   224 AETPPPPYSMMESSPSEDVKPAESSEN-KLILTAPQRDLRPVCYEEPEYWCSVAYYELNNRVGET 287

  Fly   309 FHASQPSITVDGFTDPSNSE-RFCLGLLSNVNRNEVVEQTRRHIGKGVRLYYIGGEVFAECLSDS 372
            ||||..||.|||||||||:: |||||||||||||..:|.|||||||||.|||:||||:|||||||
Zfish   288 FHASARSILVDGFTDPSNNKNRFCLGLLSNVNRNSTIEHTRRHIGKGVHLYYVGGEVYAECLSDS 352

  Fly   373 SIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALLSQSVSQGFEAVYQLTRMCTIRMSF 437
            ||||||.|||.::|:||.||||||.||:|||||||.||.||||||:.|||.||:||:||||||||
Zfish   353 SIFVQSRNCNYQHGFHPTTVCKIPSGCSLKIFNNQLFAQLLSQSVNHGFEVVYELTKMCTIRMSF 417

  Fly   438 VKGWGAEYRRQTVTSTPCWIELHLNGPLQWLDRVLTQMGSPRLPCSSMS 486
            ||||||||.||.|||||||||:||:|||||||:||||||||..|.||:|
Zfish   418 VKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPHNPISSVS 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmoxNP_001285006.1 MH1_R-SMAD 7..130 CDD:199812 69/123 (56%)
MH2_SMAD_2_3 285..475 CDD:199826 150/190 (79%)
smad9NP_001315428.1 MH1_SMAD_1_5_9 13..136 CDD:199814 71/126 (56%)
MH2_SMAD_1_5_9 266..466 CDD:199822 157/199 (79%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D274383at33208
OrthoFinder 1 1.000 - - FOG0000630
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X373
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.920

Return to query results.
Submit another query.