DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smox and Smad6

DIOPT Version :9

Sequence 1:NP_001285006.1 Gene:Smox / 31738 FlyBaseID:FBgn0025800 Length:486 Species:Drosophila melanogaster
Sequence 2:NP_001102472.2 Gene:Smad6 / 367100 RGDID:1305069 Length:495 Species:Rattus norvegicus


Alignment Length:471 Identity:128/471 - (27%)
Similarity:189/471 - (40%) Gaps:146/471 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 PFTPQVVKRLLALKKGNEDNSVEGKWSEKAVK----NLVKKIKKNSQLEELERAISTQNCQTRCV 63
            |.:.:...|||.|              |:.:|    :|:|::|:.|....||...|.......||
  Rat   157 PRSREARSRLLLL--------------EQELKTVTYSLLKRLKERSLDTLLEAVESRGGVPGGCV 207

  Fly    64 TVPRS------KPAPAGEHLRKGLPHVIYCRLWRWPDLQSQNELKPLDHC-EYAFHLRKEEICIN 121
            .|||:      :|||         |.::..||:||||||...|||||..| .:|.......:|.|
  Rat   208 LVPRADLRLGGQPAP---------PQLLLGRLFRWPDLQHAVELKPLCGCHSFAAAADGPTVCCN 263

  Fly   122 PYHYKKIELSILVPKSLPTPPDSIVDYPLDNHTHQIPNNTDYNAAIIRSASLSPPQYMELGGAGP 186
            |||:.:    :..|:| |.||.|                           .||||...:     |
  Rat   264 PYHFSR----LCGPES-PPPPYS---------------------------RLSPPDQHK-----P 291

  Fly   187 VSVSSSASSTPATAAGGGGGPSSSSSSSSSAASAYQQQQQQLSFGQNMDSQSSVLSVGSSIPNTG 251
            :.:|.|..|...|.|            ::|..:|                               
  Rat   292 LDLSDSTLSYTETEA------------TNSLITA------------------------------- 313

  Fly   252 TPPPGYMSEDGDPIDPNDNMNMSRLTPPADAAPVMYHEPAFWCSISYYELNTRVGETFHASQPSI 316
               ||..|:             :.::|.|.       :|:.|||::|:|..||||..:.....::
  Rat   314 ---PGEFSD-------------ASMSPDAT-------KPSHWCSVAYWEHRTRVGRLYAVYDQAV 355

  Fly   317 TVDGFTDPSNSERFCLGLLSNVNRNEVVEQTRRHIGKGVRLYYIGGEVFAECLSDSSIFVQSPNC 381
            ::  |.|......||||.|:...|:|.|.:||..||.|:.|......|:|....:..|||.||..
  Rat   356 SI--FYDLPQGSGFCLGQLNLEQRSESVRRTRSKIGFGILLSKEPDGVWAYNRGEHPIFVNSPTL 418

  Fly   382 NQRYGWHPATVCKIPPGCNLKIFNNQEFAALLSQSVSQGFEAVYQLTRMCTIRMSFVKGWGAEYR 446
            :.. |.....|.|:|||.::|:|:.:....|      |..:|.:......::|:||.||||..|.
  Rat   419 DAP-GGRALVVRKVPPGYSIKVFDFERSGLL------QHADAAHGPYDPHSVRISFAKGWGPCYS 476

  Fly   447 RQTVTSTPCWIELHLN 462
            ||.:||.|||:|:.||
  Rat   477 RQFITSCPCWLEILLN 492

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmoxNP_001285006.1 MH1_R-SMAD 7..130 CDD:199812 42/133 (32%)
MH2_SMAD_2_3 285..475 CDD:199826 62/178 (35%)
Smad6NP_001102472.2 MH1_SMAD_6 161..274 CDD:199817 42/139 (30%)
MH2_SMAD_6 323..493 CDD:199824 64/186 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3701
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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