DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Smox and smad2

DIOPT Version :9

Sequence 1:NP_001285006.1 Gene:Smox / 31738 FlyBaseID:FBgn0025800 Length:486 Species:Drosophila melanogaster
Sequence 2:NP_001276944.1 Gene:smad2 / 30639 ZFINID:ZDB-GENE-990603-7 Length:468 Species:Danio rerio


Alignment Length:540 Identity:303/540 - (56%)
Similarity:346/540 - (64%) Gaps:129/540 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLPFTPQVVKRLLALKK----------GNEDNSVEGKWSEKAVKNLVKKIKKNSQLEELERAIST 55
            :|||||.||||||..||          |.|.|..|.||.|||||:||||:||..||:|||:||:|
Zfish     4 ILPFTPPVVKRLLGWKKSASGSSGAGGGGEQNGQEEKWCEKAVKSLVKKLKKTGQLDELEKAITT 68

  Fly    56 QNCQTRCVTVP------------------------------RSKPAPAGEHLRKGLPHVIYCRLW 90
            ||..|:|||:|                              ||.........|||||||||||||
Zfish    69 QNRNTKCVTIPSNCSEIWGLSTPNTIEQWDTSGLYSYPDQTRSLDGRLQVSHRKGLPHVIYCRLW 133

  Fly    91 RWPDLQSQNELKPLDHCEYAFHLRKEEICINPYHYKKIELSILVPKSLPTPPDSIVDY-PLDNHT 154
            |||||.|.:||:.::.|||||:|:|:|:|:|||||:::|..:|.|..:|...:.:.:. |||::|
Zfish   134 RWPDLHSHHELRAIETCEYAFNLKKDEVCVNPYHYQRVETPVLPPVLVPRHTEILTELPPLDDYT 198

  Fly   155 HQIPNNTDYNAAIIRSASLSPPQYMELGGAGPVSVSSSASSTPATAAGGGGGPSSSSSSSSSAAS 219
            :.||.||::...|      .||                                           
Zfish   199 NSIPENTNFPTGI------EPP------------------------------------------- 214

  Fly   220 AYQQQQQQLSFGQNMDSQSSVLSVGSSIPNTGTPPPGYMSEDGDPIDPNDNMNM----------S 274
                                    .:.||.  ||||||:||||:..|...|.:|          |
Zfish   215 ------------------------NNYIPE--TPPPGYISEDGEASDQQMNQSMDTGSPAELSPS 253

  Fly   275 RLTP---PADAAPVMYHEPAFWCSISYYELNTRVGETFHASQPSITVDGFTDPSNSERFCLGLLS 336
            .|:|   ..|..||.|.||||||||:|||||.||||||||||||:||||||||||||||||||||
Zfish   254 TLSPVNHGMDLQPVTYSEPAFWCSIAYYELNQRVGETFHASQPSLTVDGFTDPSNSERFCLGLLS 318

  Fly   337 NVNRNEVVEQTRRHIGKGVRLYYIGGEVFAECLSDSSIFVQSPNCNQRYGWHPATVCKIPPGCNL 401
            |||||..||.||||||:|||||||||||||||||||:||||||||||||||||||||||||||||
Zfish   319 NVNRNATVEMTRRHIGRGVRLYYIGGEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPPGCNL 383

  Fly   402 KIFNNQEFAALLSQSVSQGFEAVYQLTRMCTIRMSFVKGWGAEYRRQTVTSTPCWIELHLNGPLQ 466
            ||||||||||||:|||:||||||||||||||||||||||||||||||||||||||||||||||||
Zfish   384 KIFNNQEFAALLAQSVNQGFEAVYQLTRMCTIRMSFVKGWGAEYRRQTVTSTPCWIELHLNGPLQ 448

  Fly   467 WLDRVLTQMGSPRLPCSSMS 486
            |||:||||||||.:.|||||
Zfish   449 WLDKVLTQMGSPSVRCSSMS 468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmoxNP_001285006.1 MH1_R-SMAD 7..130 CDD:199812 77/162 (48%)
MH2_SMAD_2_3 285..475 CDD:199826 176/189 (93%)
smad2NP_001276944.1 MH1_SMAD_2_3 8..173 CDD:199815 79/164 (48%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 224..254 10/29 (34%)
MH2_SMAD_2_3 267..457 CDD:199826 176/189 (93%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 349 1.000 Domainoid score I990
eggNOG 1 0.900 - - E1_KOG3701
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 579 1.000 Inparanoid score I996
OMA 1 1.010 - - QHG48607
OrthoDB 1 1.010 - - D274383at33208
OrthoFinder 1 1.000 - - FOG0000630
OrthoInspector 1 1.000 - - otm24510
orthoMCL 1 0.900 - - OOG6_104703
Panther 1 1.100 - - O PTHR13703
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X373
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 1 1.500 - -
1313.340

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