DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG2120 and Rex2

DIOPT Version :9

Sequence 1:NP_572446.2 Gene:CG2120 / 31737 FlyBaseID:FBgn0030005 Length:315 Species:Drosophila melanogaster
Sequence 2:NP_001171238.1 Gene:Rex2 / 100043034 MGIID:1328322 Length:685 Species:Mus musculus


Alignment Length:298 Identity:92/298 - (30%)
Similarity:137/298 - (45%) Gaps:61/298 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 ALQQRNTTEHKP----------TDMCKPKRTPTTKRHR---TTGKDHTCDICDRRFSEAYNLRIH 117
            ::.:|..:..||          ||.|      |.::|:   |..|.:.|..||:.|:|.:.||.|
Mouse   351 SIHRRIHSGEKPYKCSECDKCFTDKC------TLRKHQRIHTGEKPYKCSECDKCFTEKFTLRKH 409

  Fly   118 KMTHTDEKPHVCVECGKGFRQLNKLRIHAVTHTAERPHKCDICGKGFRYANYLTVHRRLHTGEKP 182
            :..||.|||:.|.||.|.|.....||:|...||.|:|:||..|.|.|...::|::|||:|:||||
Mouse   410 QRIHTGEKPYKCNECDKCFTDKGSLRVHQRIHTGEKPYKCSECDKCFTKPSHLSIHRRIHSGEKP 474

  Fly   183 YPCLATDCHLSFH-----SIHARRIHT--KLRHAAQTDP--DPEHPLAEQEQRDTSALSFTCPVC 238
            |.|  ::|...|.     ||| ||||:  |....::.|.  ..:..|...::.......:.|..|
Mouse   475 YKC--SECDKCFTQPSPLSIH-RRIHSGEKPYKCSECDKCFTDKGSLRVHQRIHIGEKPYKCSEC 536

  Fly   239 SRVLTDQCYLSIHLKRHYNQRDFPCPQ--------------------------PECGKRFFSASE 277
            .:..|...:||||.:.|..::.:.|.:                          .||.|.|...:.
Mouse   537 DKCFTQPSHLSIHCRIHSGEKPYKCSECDKCFTHKGSLRVHHRIHAGEKPYKCSECDKCFTEKNG 601

  Fly   278 LKHHQIAHTQQRPFACPLCPARFLRKSNHKQHLKVHER 315
            |:.||..||.::|:.|..|...|.|||    ||.:|:|
Mouse   602 LRRHQRIHTGEKPYKCSECDKCFTRKS----HLSIHQR 635

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2120NP_572446.2 C2H2 Zn finger 101..121 CDD:275368 8/19 (42%)
zf-H2C2_2 113..138 CDD:290200 13/24 (54%)
C2H2 Zn finger 129..149 CDD:275368 8/19 (42%)
zf-H2C2_2 142..166 CDD:290200 12/23 (52%)
COG5048 151..>264 CDD:227381 38/121 (31%)
C2H2 Zn finger 157..177 CDD:275368 8/19 (42%)
C2H2 Zn finger 185..206 CDD:275368 10/27 (37%)
C2H2 Zn finger 235..255 CDD:275368 7/19 (37%)
C2H2 Zn finger 263..285 CDD:275368 8/47 (17%)
C2H2 Zn finger 293..313 CDD:275368 8/19 (42%)
Rex2NP_001171238.1 KRAB 27..67 CDD:366587
C2H2 Zn finger 197..217 CDD:275368
C2H2 Zn finger 229..245 CDD:275368
C2H2 Zn finger 253..273 CDD:275368
COG5048 277..666 CDD:227381 92/298 (31%)
C2H2 Zn finger 281..301 CDD:275368
C2H2 Zn finger 309..329 CDD:275368
C2H2 Zn finger 337..357 CDD:275368 1/5 (20%)
C2H2 Zn finger 365..385 CDD:275368 5/25 (20%)
C2H2 Zn finger 393..413 CDD:275368 8/19 (42%)
C2H2 Zn finger 421..441 CDD:275368 8/19 (42%)
C2H2 Zn finger 449..469 CDD:275368 8/19 (42%)
C2H2 Zn finger 477..497 CDD:275368 8/22 (36%)
C2H2 Zn finger 505..525 CDD:275368 2/19 (11%)
C2H2 Zn finger 533..553 CDD:275368 7/19 (37%)
C2H2 Zn finger 561..581 CDD:275368 1/19 (5%)
C2H2 Zn finger 589..609 CDD:275368 7/19 (37%)
C2H2 Zn finger 617..637 CDD:275368 10/23 (43%)
C2H2 Zn finger 645..665 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.