DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG2116 and topi

DIOPT Version :10

Sequence 1:NP_572444.2 Gene:CG2116 / 31735 FlyBaseID:FBgn0030003 Length:598 Species:Drosophila melanogaster
Sequence 2:NP_649945.1 Gene:topi / 41199 FlyBaseID:FBgn0037751 Length:814 Species:Drosophila melanogaster


Alignment Length:359 Identity:90/359 - (25%)
Similarity:141/359 - (39%) Gaps:94/359 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   250 EKLPVECGICPDV----------------MHKSKLSKHHKTHLVPGTNRYACIYCTETYRDCKYL 298
            :||.:.|..| ||                ::|.|..|..:........:|.|..|.::|....:|
  Fly   463 KKLLLPCDFC-DVNFEFAHDFLAHSEEKHLNKKKREKETRNTGAGRIRQYLCDICGKSYTQSSHL 526

  Fly   299 AGHARRHMGIRPYVC--ELCTLYFSTKQDLRVHNQRRHL-EKEHICEVCGKTFAQNTQLKRHREA 360
            ..|.|.|.|::|:||  |.|...|:.:.||..|.::.|. |:.::|.||||.|...:...:|| .
  Fly   527 WQHLRFHQGVKPFVCQEENCDRKFTIRPDLNDHIRKCHTGERPYLCLVCGKRFLTGSVFYQHR-L 590

  Fly   361 THEKKRRFQCEYCQKAYYKNFSLQEHIRNVHMGKRRMLKCPFCGMQC-----RDAHKMARHRKEM 420
            .|..:||::||.|.|.:|:..:|:.|.| :|.|: :...|.||....     ||.|..|||    
  Fly   591 IHRGERRYECEECGKRFYRADALKNHQR-IHTGE-KPYSCLFCTKTFRQRGDRDKHIRARH---- 649

  Fly   421 HLSQGTYVCHLCQEEFTDISYFDAHKRSIQCRSNTRRFVNADGNREGSDSESISGRNMNGQDDDY 485
                               |:.||:.|.:.   ..::|     ..|.:.::.....|...||:|.
  Fly   650 -------------------SHLDANSRLMM---QMQKF-----QLETAAAQKAQSHNPEQQDNDV 687

  Fly   486 DGMGPLQEEYDEDDGLLVEDNQPEEQGSPSNRQYLDESEQQ-------------------YVQL- 530
            .| |....:.....|.:  ..:|    |.:..||....|||                   |:|. 
  Fly   688 AG-GASTSDVPSGSGFM--STEP----SVAEMQYSITPEQQEEMVCVPIDEVNNSFFMSHYMQAV 745

  Fly   531 ---SDYDDQHLLVENAVDAEDGGEDLDELLTEDQ 561
               .|...||::|     .|..|:::|.:...||
  Fly   746 PMEEDGSGQHIIV-----FEQPGQNMDMMSIYDQ 774

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2116NP_572444.2 C2H2 Zn finger 256..275 CDD:275368 7/34 (21%)
zf-C2H2_8 257..339 CDD:464935 26/100 (26%)
C2H2 Zn finger 285..305 CDD:275368 6/19 (32%)
PHA00733 <308..357 CDD:177301 17/51 (33%)
C2H2 Zn finger 313..334 CDD:275368 7/22 (32%)
C2H2 Zn finger 341..362 CDD:275368 8/20 (40%)
C2H2 Zn finger 370..388 CDD:275368 7/17 (41%)
C2H2 Zn finger 400..418 CDD:275370 9/22 (41%)
C2H2 Zn finger 429..447 CDD:275368 3/17 (18%)
topiNP_649945.1 C2H2 Zn finger 230..250 CDD:275370
C2H2 Zn finger 277..297 CDD:275370
C2H2 Zn finger 431..453 CDD:275368
COG5048 <450..647 CDD:227381 56/187 (30%)
C2H2 Zn finger 469..490 CDD:275368 4/21 (19%)
C2H2 Zn finger 513..564 CDD:275368 17/50 (34%)
C2H2 Zn finger 541..561 CDD:275368 7/19 (37%)
C2H2 Zn finger 572..592 CDD:275368 8/20 (40%)
C2H2 Zn finger 600..620 CDD:275368 8/20 (40%)
zf-H2C2_2 612..637 CDD:463886 8/26 (31%)
C2H2 Zn finger 628..646 CDD:275368 6/17 (35%)
Blue background indicates that the domain is not in the aligned region.

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