DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ldsdh1 and rdh10a

DIOPT Version :9

Sequence 1:NP_572436.1 Gene:Ldsdh1 / 31726 FlyBaseID:FBgn0029994 Length:320 Species:Drosophila melanogaster
Sequence 2:NP_001074052.1 Gene:rdh10a / 562840 ZFINID:ZDB-GENE-070112-2242 Length:339 Species:Danio rerio


Alignment Length:255 Identity:83/255 - (32%)
Similarity:140/255 - (54%) Gaps:26/255 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 LVVDIVMLIVKF-WLAIAEAIVGLFRAPPLDDVNGKVVLITGTGHGMGKEMALQYAKLGATILCW 88
            :.|:..::::|. |..:......|.| |....|.|:|.:|||.|.|:|:..|.::|:..||::.|
Zfish     3 IFVEFFLVMLKVCWAIVMAGFKWLIR-PKEKSVAGQVCVITGAGGGLGRLFAKEFARRRATLVLW 66

  Fly    89 DVNEQTNNQTVKEIK------NN--------GG---------KAFGYVCNVTKREELIELAQKVR 130
            |:|..:|.:|.:.::      :|        ||         :.:.||.:|.|||.:...|:|||
Zfish    67 DINSHSNEETAEMVRQIYREQDNPMSKEGAVGGVEEVPPFQPQVYTYVLDVGKRESVYSTAEKVR 131

  Fly   131 KEHGFIHVVVNNAGIMPCHPLLEHTENEIRLMYEINVLSHFWIIQAFLPDMIERNEGSIVALSSC 195
            :|.|.:.:::||||::..|.|||..:..|.....:|..:|||..:||||.|:|.|.|.||.::|.
Zfish   132 REVGEVDLLINNAGVVSGHHLLECPDELIERTMVVNCHAHFWTTKAFLPKMLEMNHGHIVTVASS 196

  Fly   196 AGLFGLINLVPYCGTKFAVRGYMAALVEELRQKNPQNNVKLTTIYPYMIDTGLCKNPRYR 255
            .|||....:..||.:||...|:..:|..|: |.:.::.:|:|.:.||::|||:.:..|.|
Zfish   197 LGLFSTAGVEDYCASKFGAIGFHESLSHEI-QASEKDGIKMTLVCPYLVDTGMFRGCRIR 255

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ldsdh1NP_572436.1 adh_short 59..248 CDD:278532 72/211 (34%)
NADB_Rossmann 60..287 CDD:304358 75/219 (34%)
rdh10aNP_001074052.1 adh_short 37..250 CDD:278532 73/213 (34%)
17beta-HSDXI-like_SDR_c 38..305 CDD:187598 75/219 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1201
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1373099at2759
OrthoFinder 1 1.000 - - FOG0000227
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24322
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.920

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