DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ldsdh1 and hsd17b13

DIOPT Version :9

Sequence 1:NP_572436.1 Gene:Ldsdh1 / 31726 FlyBaseID:FBgn0029994 Length:320 Species:Drosophila melanogaster
Sequence 2:NP_001011240.1 Gene:hsd17b13 / 496682 XenbaseID:XB-GENE-995635 Length:300 Species:Xenopus tropicalis


Alignment Length:235 Identity:76/235 - (32%)
Similarity:142/235 - (60%) Gaps:4/235 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 NIVLLVVDIVMLIVKFWLAIAEAIVGLFRAPPLDDVNGKVVLITGTGHGMGKEMALQYAKLGATI 85
            ||:|..:.::.:.|..::   |:.|.||.......|.|.:|||||:|||:|:..||::||..:.:
 Frog     2 NIILEYMFLLFIAVYSYM---ESFVKLFLPVNRKSVAGNIVLITGSGHGIGRRTALEFAKHESIL 63

  Fly    86 LCWDVNEQTNNQTVKEIKNNGGKAFGYVCNVTKREELIELAQKVRKEHGFIHVVVNNAGIMPCHP 150
            :.||:|::...:|..|.:..|..|:.:|.:.:.|.::...|:||:::.|.:.:::||||::....
 Frog    64 VLWDINQKGVEETADECRKLGATAYAFVVDCSTRNDIYRCAEKVKQDIGDVDILINNAGVVFGTE 128

  Fly   151 LLEHTENEIRLMYEINVLSHFWIIQAFLPDMIERNEGSIVALSSCAGLFGLINLVPYCGTKFAVR 215
            .|:..:::|...:.:|:|:|||..::||..|::::.|.||.::|.||..|:..||.||.:||.:.
 Frog   129 FLKLQDHQIEKTFSVNILAHFWTTKSFLSAMMKKDRGHIVTVASIAGQLGVPYLVDYCASKFGLV 193

  Fly   216 GYMAALVEELRQKNPQNNVKLTTIYPYMIDTGLCKNPRYR 255
            |:..:|..||:... ::.||.|.:.|..::||..:||..|
 Frog   194 GFHESLTSELKLLG-KDGVKTTCLCPVFVNTGFVQNPSTR 232

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ldsdh1NP_572436.1 adh_short 59..248 CDD:278532 62/188 (33%)
NADB_Rossmann 60..287 CDD:304358 66/196 (34%)
hsd17b13NP_001011240.1 17beta-HSDXI-like_SDR_c 38..277 CDD:187598 66/196 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1373099at2759
OrthoFinder 1 1.000 - - FOG0000227
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24322
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.020

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