DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ldsdh1 and rdh10

DIOPT Version :9

Sequence 1:NP_572436.1 Gene:Ldsdh1 / 31726 FlyBaseID:FBgn0029994 Length:320 Species:Drosophila melanogaster
Sequence 2:NP_001011091.1 Gene:rdh10 / 496504 XenbaseID:XB-GENE-944961 Length:341 Species:Xenopus tropicalis


Alignment Length:257 Identity:85/257 - (33%)
Similarity:141/257 - (54%) Gaps:28/257 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 LVVDIVMLIVK-FWLAIAEAIVGLFRAPPLDDVNGKVVLITGTGHGMGKEMALQYAKLGATILCW 88
            :|::..::..| .|..:..|...|.| |....|.|:|.||||.|.|:|:..||::|:..|.::.|
 Frog     3 IVLEFFLVTFKVLWAFVLAAAKWLVR-PKDKSVAGQVCLITGAGSGLGRLFALEFARRRAQLVLW 66

  Fly    89 DVNEQTNNQTVKEIKN------------NGGKA-------------FGYVCNVTKREELIELAQK 128
            |:|.|:|.:|.:.:::            ..|.|             :.|.|:|.|||.:...|::
 Frog    67 DINSQSNEETAEMVRSIYRELEAEDSARRAGNATEEEVQPCCNFQVYTYTCDVGKRESVYSTAER 131

  Fly   129 VRKEHGFIHVVVNNAGIMPCHPLLEHTENEIRLMYEINVLSHFWIIQAFLPDMIERNEGSIVALS 193
            ||:|.|.:::::||||::..|.|||..:..|.....:|..:|||..:||||.|:|.|.|.||:::
 Frog   132 VRREVGDVYLLLNNAGVVSGHHLLECPDELIERTMMVNCHAHFWTTKAFLPKMMEMNHGHIVSVA 196

  Fly   194 SCAGLFGLINLVPYCGTKFAVRGYMAALVEELRQKNPQNNVKLTTIYPYMIDTGLCKNPRYR 255
            |..|||....:..||.:||.|.|:..:|..||:..: ::.:|.|.:.||::|||:.:..|.|
 Frog   197 SSLGLFSTAGVEDYCASKFGVVGFHESLSHELKAAD-KDGIKTTLVCPYLVDTGMFRGCRIR 257

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ldsdh1NP_572436.1 adh_short 59..248 CDD:278532 73/213 (34%)
NADB_Rossmann 60..287 CDD:304358 76/221 (34%)
rdh10NP_001011091.1 17beta-HSDXI-like_SDR_c 38..307 CDD:187598 76/221 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1373099at2759
OrthoFinder 1 1.000 - - FOG0000227
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24322
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
55.020

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