DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ldsdh1 and sdr16c5

DIOPT Version :9

Sequence 1:NP_572436.1 Gene:Ldsdh1 / 31726 FlyBaseID:FBgn0029994 Length:320 Species:Drosophila melanogaster
Sequence 2:NP_001004963.1 Gene:sdr16c5 / 448386 XenbaseID:XB-GENE-942748 Length:305 Species:Xenopus tropicalis


Alignment Length:292 Identity:92/292 - (31%)
Similarity:167/292 - (57%) Gaps:5/292 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 NIVLLVVDIVMLIVKFWLAIAEAIVGLFRAPPLDDVNGKVVLITGTGHGMGKEMALQYAKLGATI 85
            ||.|..:.::.|.:...|   |:.|..|......:|.|::|||||.|.|:|:.|||::|.||||:
 Frog     2 NIFLETLKVLFLTIYLNL---ESFVLWFIPSRKKNVAGEIVLITGAGSGIGRLMALEFAHLGATL 63

  Fly    86 LCWDVNEQTNNQTVKEIKNNGG-KAFGYVCNVTKREELIELAQKVRKEHGFIHVVVNNAGIMPCH 149
            :.||:||:.|.:|.:..|.||. :...|:|:.:||:|:.::|.:|:||.|.:.:::|||||:...
 Frog    64 VLWDINEEGNKETCRLAKKNGAVRVHAYLCDCSKRQEVYKVADQVKKEVGDVSILINNAGIVTGK 128

  Fly   150 PLLEHTENEIRLMYEINVLSHFWIIQAFLPDMIERNEGSIVALSSCAGLFGLINLVPYCGTKFAV 214
            ..::..:..:....::|.::|||..:||||.|:..|.|.:|:::|.|||.|:..|..||.:|||.
 Frog   129 KFIDSPDALVEKTMQVNCMAHFWTYKAFLPAMMASNHGHLVSIASSAGLIGVNGLADYCASKFAA 193

  Fly   215 RGYMAALVEELRQKNPQNNVKLTTIYPYMIDTGLCKNPRYRFPNLFKLIPADVAAGSIIEAQRQG 279
            .|:..::..|:.... :..:|.|.:.||.|:||:......::|.|..::.|:.|:..|::|..:.
 Frog   194 VGFAESVGLEMLALG-KTGIKTTIVCPYFINTGMFDGCSTKWPRLLPILEAEYASKKIVDAILKD 257

  Fly   280 LEEAAIPRHFVAAEKIGRLIPRKAMRLVNDFF 311
            .....:||.......:..::..|...::.::|
 Frog   258 QVYLVMPRSLYIMFALKNIMSTKLGVVLGNYF 289

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ldsdh1NP_572436.1 adh_short 59..248 CDD:278532 71/189 (38%)
NADB_Rossmann 60..287 CDD:304358 78/227 (34%)
sdr16c5NP_001004963.1 17beta-HSDXI-like_SDR_c 38..281 CDD:187598 80/243 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1373099at2759
OrthoFinder 1 1.000 - - FOG0000227
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24322
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.020

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