DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ldsdh1 and sdr16c5b

DIOPT Version :9

Sequence 1:NP_572436.1 Gene:Ldsdh1 / 31726 FlyBaseID:FBgn0029994 Length:320 Species:Drosophila melanogaster
Sequence 2:NP_999936.1 Gene:sdr16c5b / 406799 ZFINID:ZDB-GENE-040426-2861 Length:306 Species:Danio rerio


Alignment Length:291 Identity:99/291 - (34%)
Similarity:166/291 - (57%) Gaps:5/291 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 NIVLLVVDIVMLIVKFWLAIAEAIVGLFRAPPLDDVNGKVVLITGTGHGMGKEMALQYAKLGATI 85
            |.:|..:.::.|.:...|   ||.|.||..|...:|:|::||:||.|.|:|:.|||::|:|.|.:
Zfish     2 NFLLETLRVLFLSLVLGL---EAFVRLFIPPRRKNVSGELVLLTGAGSGIGRLMALEFARLDARL 63

  Fly    86 LCWDVNEQTNNQTVKEIKNN-GGKAFGYVCNVTKREELIELAQKVRKEHGFIHVVVNNAGIMPCH 149
            :.||:||..|.:|.:.||.. |.:|..|.|:.:.|||:..:|.:|::|.|.:.:::|||||:...
Zfish    64 VLWDINEDGNKETARLIKEKYGARAHTYTCDCSDREEVYRVANQVKREVGDVTILINNAGIVTGK 128

  Fly   150 PLLEHTENEIRLMYEINVLSHFWIIQAFLPDMIERNEGSIVALSSCAGLFGLINLVPYCGTKFAV 214
            ..::..::.|....|:|.|:|||..:||||.||..|.|.:|:::|.|||.|:..|..||.:|||.
Zfish   129 KFMDSPDSLIEKSMEVNSLAHFWTYKAFLPAMIAGNHGHLVSIASSAGLIGVNGLADYCASKFAA 193

  Fly   215 RGYMAALVEELRQKNPQNNVKLTTIYPYMIDTGLCKNPRYRFPNLFKLIPADVAAGSIIEAQRQG 279
            .|:..::..||.... .:.||.|.:.|:.|:||:......::|.|..::..|.|...|::|.|:.
Zfish   194 VGFAESMGLELLATG-CDGVKTTIVCPFFINTGMFDGANTKWPRLMPILDPDYACRKIVDAIRRE 257

  Fly   280 LEEAAIPRHFVAAEKIGRLIPRKAMRLVNDF 310
            .....:||.......:..|:|.|...|:.::
Zfish   258 QVYLYMPRSIYIIIGLRNLLPTKVGVLLGEY 288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ldsdh1NP_572436.1 adh_short 59..248 CDD:278532 73/189 (39%)
NADB_Rossmann 60..287 CDD:304358 81/227 (36%)
sdr16c5bNP_999936.1 17beta-HSDXI-like_SDR_c 38..281 CDD:187598 85/243 (35%)
adh_short 39..233 CDD:278532 74/194 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1373099at2759
OrthoFinder 1 1.000 - - FOG0000227
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100599
Panther 1 1.100 - - O PTHR24322
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.920

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