DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ldsdh1 and sdr16c5a

DIOPT Version :10

Sequence 1:NP_572436.1 Gene:Ldsdh1 / 31726 FlyBaseID:FBgn0029994 Length:320 Species:Drosophila melanogaster
Sequence 2:NP_998043.2 Gene:sdr16c5a / 405814 ZFINID:ZDB-GENE-040426-2049 Length:306 Species:Danio rerio


Alignment Length:294 Identity:94/294 - (31%)
Similarity:165/294 - (56%) Gaps:9/294 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 NIVLLVVDIVMLIVKFWLAIAEAIVGLFRAPPLDDVNGKVVLITGTGHGMGKEMALQYAKLGATI 85
            ||:|..:.::.|.|.:.|   ||.:..|......||:|::|||||:|.|:|:.|||::|.|..::
Zfish     2 NILLETLRLIFLTVYYNL---EAFLKFFIPLRKKDVSGEIVLITGSGSGIGRLMALEFASLDVSL 63

  Fly    86 LCWDVNEQTNNQTVKEIKNNG-GKAFGYVCNVTKREELIELAQKVRKEHGFIHVVVNNAGIMPCH 149
            :.||:|.....:|.:::|..| .:...|.|:.:.||.:..:|.:|:.|.|.:.:::|||||:...
Zfish    64 VLWDINVDGLKETAEQVKEKGASRVHYYQCDCSDREAVYRVADQVKSEIGDVTILINNAGIVSGK 128

  Fly   150 PLLEHTENEIRLMYEINVLSHFWIIQAFLPDMIERNEGSIVALSSCAGLFGLINLVPYCGTKFAV 214
            ..::..:..|.....:|.:||||..:||||.|:::|.|.:|:::|.|||.|:..|..||.:|||.
Zfish   129 KFMDTPDALIEKTLRVNAMSHFWTYKAFLPAMMDKNHGHLVSVASSAGLIGVNGLADYCASKFAA 193

  Fly   215 RGYMAALVEELRQKNPQNNVKLTTIYPYMIDTGLCKNPRYRFPNLFKLIPADVAAGSIIEAQRQG 279
            .|:..::..||.... ::.:|.|.:.|::|:|||......::|.|..::..|..|..|:.|....
Zfish   194 VGFAESVALELLSAG-KDGIKTTIVCPFLINTGLFDGCGTKWPLLMPMLEPDYVAKRIVSAILTD 257

  Fly   280 LEEAAIPR--HFVAAEKIGRLIPRKAMRLVNDFF 311
            .....:||  :|:.|.|  .:||.|...::..:|
Zfish   258 QVFVLLPRSLYFLMALK--GVIPYKQSVILGMYF 289

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ldsdh1NP_572436.1 Rossmann-fold NAD(P)(+)-binding proteins 60..287 CDD:473865 73/227 (32%)
sdr16c5aNP_998043.2 17beta-HSDXI-like_SDR_c 38..280 CDD:187598 80/244 (33%)

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