DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ldsdh1 and firl

DIOPT Version :9

Sequence 1:NP_572436.1 Gene:Ldsdh1 / 31726 FlyBaseID:FBgn0029994 Length:320 Species:Drosophila melanogaster
Sequence 2:NP_001033900.2 Gene:firl / 34627 FlyBaseID:FBgn0032405 Length:318 Species:Drosophila melanogaster


Alignment Length:304 Identity:134/304 - (44%)
Similarity:201/304 - (66%) Gaps:1/304 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 SNDIYNIVLLVVDIVMLIVKFWLAIAEAIVGLFRAPPLDDVNGKVVLITGTGHGMGKEMALQYAK 80
            |..|::::..|:....|.|:..|.:..::|.:.......||:|::|||||||||:|:|:||.||.
  Fly    13 SKRIFDVLKDVLQFFELYVRILLELFVSLVQIVLPKKQKDVSGEIVLITGTGHGIGRELALHYAS 77

  Fly    81 LGATILCWDVNEQTNNQTVKEIKN-NGGKAFGYVCNVTKREELIELAQKVRKEHGFIHVVVNNAG 144
            ||:|::|.|::.:.|.|||::.|. |.|:.:.|.|:|:||:|:..||.:::.:.|.|.|:|||.|
  Fly    78 LGSTVVCVDIDGKNNLQTVEKAKRLNLGEVYSYSCDVSKRDEVTALADRIKSDVGCISVLVNNVG 142

  Fly   145 IMPCHPLLEHTENEIRLMYEINVLSHFWIIQAFLPDMIERNEGSIVALSSCAGLFGLINLVPYCG 209
            |||.||:|:.:..||:.::::||.|.||.||||||.|.|:..|.|:.:||.|||.|:.||||||.
  Fly   143 IMPTHPILQQSAEEIQRVFDVNVFSQFWTIQAFLPHMQEKCRGHIICMSSIAGLVGISNLVPYCA 207

  Fly   210 TKFAVRGYMAALVEELRQKNPQNNVKLTTIYPYMIDTGLCKNPRYRFPNLFKLIPADVAAGSIIE 274
            |||||||.|.||..||||...::.::.|||:|||.:|||||:|:.:||::..|:.....|..|:|
  Fly   208 TKFAVRGLMEALHAELRQGPFRDLIRTTTIFPYMTNTGLCKHPKVKFPSILGLLDPKQVAKRIVE 272

  Fly   275 AQRQGLEEAAIPRHFVAAEKIGRLIPRKAMRLVNDFFDTGVDTD 318
            |.|..|.|..||...:......||:|.....::.||.|:||::|
  Fly   273 AHRTDLMEVTIPSCLLYINNWTRLLPDHCGLMLKDFIDSGVESD 316

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ldsdh1NP_572436.1 adh_short 59..248 CDD:278532 98/189 (52%)
NADB_Rossmann 60..287 CDD:304358 114/227 (50%)
firlNP_001033900.2 adh_short 56..246 CDD:278532 98/189 (52%)
17beta-HSDXI-like_SDR_c 57..299 CDD:187598 117/241 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464251
Domainoid 1 1.000 91 1.000 Domainoid score I1741
eggNOG 1 0.900 - - E2759_KOG1201
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 96 1.000 Inparanoid score I1486
Isobase 1 0.950 - 1 Normalized mean entropy S1933
OMA 1 1.010 - - QHG28136
OrthoDB 1 1.010 - - D1373099at2759
OrthoFinder 1 1.000 - - FOG0000227
OrthoInspector 1 1.000 - - mtm9177
orthoMCL 1 0.900 - - OOG6_100599
Panther 1 1.100 - - P PTHR24322
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X7624
1312.760

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