DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ldsdh1 and Wwox

DIOPT Version :10

Sequence 1:NP_572436.1 Gene:Ldsdh1 / 31726 FlyBaseID:FBgn0029994 Length:320 Species:Drosophila melanogaster
Sequence 2:NP_609171.1 Gene:Wwox / 34090 FlyBaseID:FBgn0031972 Length:409 Species:Drosophila melanogaster


Alignment Length:263 Identity:55/263 - (20%)
Similarity:104/263 - (39%) Gaps:62/263 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 DVNGKVVLITGTGHGMGKEMALQYAKLGATILCWDVNEQTNNQTVKEIKNNGGKA-----FGYVC 114
            |::|:..||||...|:|.|.|...|..|..|:....|..:....::.|......|     |. ..
  Fly   118 DLHGRTALITGANCGIGYETARSLAHHGCEIIFACRNRSSAEAAIERIAQERPAARSRCRFA-AL 181

  Fly   115 NVTKREELIELAQKVRKEHGFIHVVVNNAGI--MPCHPLLEHTENEIRLMYEINVLSHFWIIQAF 177
            :::....:....:::::....|..::.|||:  :|    ...|.:.:...::::.||||::....
  Fly   182 DLSSLRSVQRFVEEIKQSVSHIDYLILNAGVFALP----YTRTVDGLETTFQVSHLSHFYLTLQL 242

  Fly   178 --LPDMIERNEGSIVALSSCAGLFGLI-----------------------NLVPYCGTKFAVRGY 217
              |.|...|    |:.|||.:..|..:                       |....|...||    
  Fly   243 ETLFDYKTR----IIVLSSESHRFANLPVENLAVHHLSPPPEKYWSMMAYNNAKLCNVLFA---- 299

  Fly   218 MAALVEELRQKNPQNNVKLTTIYP-YMIDTGLCKNPRYRFPNLFKLIPADVAAGSIIEAQRQGLE 281
                 :||.|:..|..:.:.:::| .|:.:.|.:|  |.|   ::|:.|      |:....:.|:
  Fly   300 -----QELAQRWKQRGISVFSLHPGNMVSSDLSRN--YWF---YRLLFA------IVRPFTKSLQ 348

  Fly   282 EAA 284
            :||
  Fly   349 QAA 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ldsdh1NP_572436.1 Rossmann-fold NAD(P)(+)-binding proteins 60..287 CDD:473865 53/258 (21%)
WwoxNP_609171.1 WW 13..43 CDD:197736
human_WWOX_like_SDR_c-like 121..402 CDD:187669 54/260 (21%)
Blue background indicates that the domain is not in the aligned region.

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