DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ldsdh1 and SPBC16H5.14c

DIOPT Version :9

Sequence 1:NP_572436.1 Gene:Ldsdh1 / 31726 FlyBaseID:FBgn0029994 Length:320 Species:Drosophila melanogaster
Sequence 2:NP_595933.1 Gene:SPBC16H5.14c / 2539946 PomBaseID:SPBC16H5.14c Length:286 Species:Schizosaccharomyces pombe


Alignment Length:285 Identity:58/285 - (20%)
Similarity:106/285 - (37%) Gaps:55/285 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 NIVLLVVDIVMLIVKF-WLAIAEAIVGLFRAPPLDDVNGKVVLITGTGHGMGKEMALQYAKLGAT 84
            :|:|||:.:|...:.. |..:      |||........|.:|:..|:|. :|..:..:....|.:
pombe     4 HILLLVISLVCAALTLSWFPL------LFRKQSYSCAKGLIVITGGSGI-LGHAIIQEALDRGFS 61

  Fly    85 ILCWDVNEQTN----NQTVKEIKNNGGKAFGYVCNVTKREELIELAQKVRKEHGFIHVVVNNAGI 145
            :...|..|..:    |.....:|          ||:||.:::......::|.:.....::|.|.|
pombe    62 VASLDSTEPASFLQYNSKFSALK----------CNITKDKDVEGCVHSLKKMNRTPFALINAAAI 116

  Fly   146 MPCHPLLEHTENEIRLMYEINVLSHFWIIQAFLPDMIERNEGSIVALSSCAGLFGLINLVPYCGT 210
            .|.:.||..:..|::..:|.||:....|..|..|.:::.....:|.::|....|..:.:..|..:
pombe   117 APKNHLLSISRQELQKCFETNVIGQLAITSALFPLLLQDPNPHVVNIASSLAYFSAMGVGAYSSS 181

  Fly   211 KFAVRGYMAALVEELRQKN--------------------------------PQNNVKLTTIYPYM 243
            |.|:......|.||:..::                                |||..|:.....|.
pombe   182 KAALVSLHETLEEEVLSQHPNFKFSLYVLGQIKSTMFEKDTPNRVLAPLLEPQNLAKIIIQNLYT 246

  Fly   244 IDTGLCKNPRY-RFPNLFKLIPADV 267
            ..:|....|.| ||..|.:..|..:
pombe   247 NKSGRFYYPFYARFMPLLRFFPLPI 271

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ldsdh1NP_572436.1 adh_short 59..248 CDD:278532 41/224 (18%)
NADB_Rossmann 60..287 CDD:304358 48/245 (20%)
SPBC16H5.14cNP_595933.1 17beta-HSDXI-like_SDR_c 37..271 CDD:187598 48/244 (20%)
adh_short 38..225 CDD:278532 36/197 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1201
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100599
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.800

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