DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ldsdh1 and Sdr16c6

DIOPT Version :9

Sequence 1:NP_572436.1 Gene:Ldsdh1 / 31726 FlyBaseID:FBgn0029994 Length:320 Species:Drosophila melanogaster
Sequence 2:NP_001074179.1 Gene:Sdr16c6 / 242286 MGIID:2685269 Length:316 Species:Mus musculus


Alignment Length:298 Identity:101/298 - (33%)
Similarity:164/298 - (55%) Gaps:14/298 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 VVDIVMLIVKFWLAIAEAIVGLFRAPP--LDDVNGKVVLITGTGHGMGKEMALQYAKLGATILCW 88
            |.|..:...||.....|::|  |:..|  ..||:|::|||||.|.|:|:.:|:.:|..|||::.|
Mouse     4 VADTAIFFGKFLYYFLESLV--FKVIPKRKKDVSGEIVLITGAGSGLGRLLAIHFASHGATLVLW 66

  Fly    89 DVNEQTNNQTVKEIKNNGG-KAFGYVCNVTKREELIELAQKVRKEHGFIHVVVNNAGIMPCHPLL 152
            |:|::.|.:|.:.:|..|. |.|.|.|:.:.|.|:..:|.:|::|.|.:.:::||||::.....|
Mouse    67 DINQEGNMETCRLVKQKGDVKVFAYKCDCSSRIEVYRVADQVKEEVGDVTILINNAGVVTGKSFL 131

  Fly   153 EHTENEIRLMYEINVLSHFWIIQAFLPDMIERNEGSIVALSSCAGLFGLINLVPYCGTKFAVRGY 217
            ...::.:...:.:|.:||||..:||||.|::.|.|.:|.:||.|||.|:..|..|..:|||..|:
Mouse   132 NTPDHLVEKSFLVNAISHFWTCKAFLPAMVKANHGHLVCISSIAGLVGINGLSDYSSSKFAAFGF 196

  Fly   218 MAALVEELRQKNPQNNVKLTTIYPYMIDTGLCKNPRYRFPNLFKLIPADVAAGSIIEAQRQGLEE 282
            ..:|..||.. ..:..||.|.:.||.|.||:.:....::|.|..|:..:..|..|..|.   |||
Mouse   197 AESLFLELTM-IMKTKVKSTIVCPYFIKTGMFEGCTTKYPLLLPLLEQEYVAQKIFNAI---LEE 257

  Fly   283 AA---IPRHFVAAEKIGRLIPRKAMRLVNDFFDTGVDT 317
            ..   ||:....|..:.::|..|.|..:.::.  ||||
Mouse   258 QVYLIIPKFAYVALFLKQIISPKMMIALGEYL--GVDT 293

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ldsdh1NP_572436.1 adh_short 59..248 CDD:278532 70/189 (37%)
NADB_Rossmann 60..287 CDD:304358 81/230 (35%)
Sdr16c6NP_001074179.1 adh_short 37..227 CDD:278532 71/190 (37%)
17beta-HSDXI-like_SDR_c 38..276 CDD:187598 83/241 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1201
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1373099at2759
OrthoFinder 1 1.000 - - FOG0000227
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100599
Panther 1 1.100 - - O PTHR24322
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.820

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