DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fs(1)h and pbrm1l

DIOPT Version :9

Sequence 1:NP_001259321.1 Gene:fs(1)h / 31722 FlyBaseID:FBgn0004656 Length:2046 Species:Drosophila melanogaster
Sequence 2:XP_005168819.1 Gene:pbrm1l / 445141 ZFINID:ZDB-GENE-010501-3 Length:1657 Species:Danio rerio


Alignment Length:732 Identity:135/732 - (18%)
Similarity:226/732 - (30%) Gaps:236/732 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 KLNLPDYHKIIKQPMDMGTIKKRLENNYYWSAKETIQDFNTMFNNCYVYNKPGEDVVVMAQTLEK 131
            ||:.|||:.:||:|:|:..:.::::..:|.|.....:|.:.:..|...||:||..|...|.|::|
Zfish   216 KLHYPDYYAVIKEPIDLRAVAQKIQGGHYKSISAMAKDIDLLVKNAKTYNEPGSQVFKDANTIKK 280

  Fly   132 VFLQKIESMPKEELE-LEPVTAKGGKKKQRAPATPKSSSGGAGASTGSGTSSAAVTSGP---GSG 192
            ||.|:     |.|:| .||.......:.:|:....:.|:.......||.:...::.:|.   .:|
Zfish   281 VFAQR-----KIEIEQAEPTKTSLRIRNRRSAQGDRLSAITMALQAGSESDEDSILTGTVRYDTG 340

  Fly   193 STKVSVAASSAQ-----QSGLQGATGAGGGSSSTPGTQPGSGAGGAIAAR------------PVS 240
            .|:.....|:..     ...::||....|...|.|..|        :.:|            |:|
Zfish   341 ETEADCGLSAGDPILLLYQAVRGARSVQGLLLSEPFLQ--------LPSRREYPDYYHQIKNPIS 397

  Fly   241 AMGGTVSSTAGGAPSIPPIS-------------TMPPHTV----------------------PGS 270
            ..........|...::..|.             .||..|:                      .|.
Zfish   398 LQQIREKMKNGDYEAVEQIEADLSVMFENARRYNMPNSTIYKRAQRLQLIMQQKKREFRDDDEGD 462

  Fly   271 TNTTTTAMAGGVGGPGAAGANPNAAALM-ASLLNAGQTGA----------------YP------- 311
            .:|..:.:...........|..|...:: |.|.:|.:.|:                ||       
Zfish   463 VSTANSDVGSSKKKSHKKSAKKNRMKMLYAVLTDAREPGSGRRLCDLFMVKPLKKDYPDYYKIIQ 527

  Fly   312 ----------GAPGQTAVNSSSLLDGSTAAVAAAAAAAAAAAAAAGGAAGAAGGAGTIPAVAVNA 366
                      ....:...|..:|::.                                  :.:..
Zfish   528 DPMDMRTIENNIRTERYNNEDALMED----------------------------------MKLMF 558

  Fly   367 ANAVQAYVNAGVSVGVDAVIPPQQPAKIKKGVKRKADTTTPTANAFESPYTQMDSKSAKIATRRE 431
            .|| :.|...|..|..||.:       ::|.||.|.....|...       :.|..|.|:..|| 
Zfish   559 RNA-RHYNEEGSQVYNDANV-------LEKMVKDKQKELGPAPE-------EDDVGSPKLKLRR- 607

  Fly   432 SNRQVIGKKGSGYNMSPLGVSGVPGLGGLVAGGVAGVAVAKNKEK-----LSDALKSCNEILKEL 491
                                              :||||:..|.:     |...|....|.::..
Zfish   608 ----------------------------------SGVAVSPKKARIQTTPLQQKLSELYEAVRNF 638

  Fly   492 FSKKHSGYAWPFYK-PVDAEMLGLHDYHDIIKKPMDLGTVKRKMDNREYKSAPEFAADVRLIFTN 555
            ...:....:..|.: |..:|   |.||:..||:|:|:..::..|....|:.....|.|..|:|.|
Zfish   639 TDNRGRRLSTVFLRLPSRSE---LPDYYAAIKRPIDMERIRSYMVQGRYQDVDSLAEDFILMFNN 700

  Fly   556 CYKYNPPDHDVVAMGRKLQDVFEMRYANIPDEPVANAAHHHGHGHGHGHGHGHGHG--------- 611
            ...||.|:..:......|...|......|.:|.               :|...|.|         
Zfish   701 ACTYNEPESLIYRDALLLHRAFLEARRRIEEEE---------------NGDEGGLGGLSVASLVR 750

  Fly   612 ----------HGHGHGHGHGYGGSSSLKH-DASDSSSEDSSDTENE---SNSDEERSARLKMLES 662
                      .||....|..|  |.||.. .|.|.::.|......|   :|.|..|..||.:.:.
Zfish   751 ELIRNLFVSMMGHQDDEGRCY--SDSLAEVPAIDPANPDDPPLTLEIIRNNVDSGRYRRLDVFQE 813

  Fly   663 KLLGLQEEIRKLSEEAS 679
            .:..:.|:.|:|:...|
Zfish   814 HVFEVLEKARRLNRTDS 830

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fs(1)hNP_001259321.1 Bromo_Brdt_I_like 34..140 CDD:99929 24/72 (33%)
COG5076 387..>593 CDD:227408 42/211 (20%)
Bromo_Brdt_II_like 481..581 CDD:99930 24/100 (24%)
BET 951..1015 CDD:293640
BRD4_CDT <2026..2046 CDD:293710
pbrm1lXP_005168819.1 Bromo_polybromo_I 43..152 CDD:99954
Bromo_polybromo_II 184..286 CDD:99948 24/74 (32%)
Bromo_polybromo_III 352..452 CDD:99951 14/107 (13%)
Bromo_polybromo_IV 485..585 CDD:99949 19/141 (13%)
Bromo_polybromo_V 624..723 CDD:99946 24/101 (24%)
Bromo_polybromo_VI 746..853 CDD:99956 20/87 (23%)
BAH_polybromo 933..1049 CDD:240068
BAH_polybromo 1123..1241 CDD:240068
HMG-box 1346..1408 CDD:238037
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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