DRSC/TRiP Functional Genomics Resources

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Protein Alignment fs(1)h and pbrm-1

DIOPT Version :9

Sequence 1:NP_001259321.1 Gene:fs(1)h / 31722 FlyBaseID:FBgn0004656 Length:2046 Species:Drosophila melanogaster
Sequence 2:NP_001021008.1 Gene:pbrm-1 / 172504 WormBaseID:WBGene00007042 Length:1883 Species:Caenorhabditis elegans


Alignment Length:1954 Identity:358/1954 - (18%)
Similarity:578/1954 - (29%) Gaps:728/1954 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 KTVMKVIWKHHFSWPFQQPVDAKKLNL---------------PDYHKIIKQPMDMGTIKKRLENN 93
            :|..:.:||.:  |..:..|..|..|:               |||:..||.|:.:..|.|||:|.
 Worm   338 ETNSEPMWKLY--WTIRNAVHEKDRNVTLADNFLELPSKESYPDYYDEIKNPVSIFMINKRLKNG 400

  Fly    94 YYWSAKETIQDFNTMFNNCYVYNKPGEDVVVMAQTLEKVFLQKIESM-PKEEL-ELEPVTAKGGK 156
            .| ..|..:.|...|::|.:.||....:|.:.|:.|:.:.:...:.: |..:: :.||..|    
 Worm   401 KY-DLKSLVADLMQMYSNAFDYNLESSEVYISAEKLKALTISTCKQLVPSFDVSQYEPAPA---- 460

  Fly   157 KKQRAPATPKSSSGGAGASTGSGTSSAAVTSGPGSGSTKVSVAASSAQQSGLQGATGAGGGSSST 221
              |..|..||::                    |.....|:.:..:.::             .|.|
 Worm   461 --QLTPVKPKAT--------------------PHRARIKIEMPDTDSE-------------DSRT 490

  Fly   222 PGTQPGSGAGGAIAARPVSAMGGTVSSTAGGAPSIPPISTMPPHTVP---GSTNTTTTAMAGGVG 283
            |                                  ||.........|   ||..|.|..     |
 Worm   491 P----------------------------------PPTHKRKSPKKPRENGSVPTPTFK-----G 516

  Fly   284 GPGAAGANPNAA-----ALMASLLN-------AGQTGAYP-GA----PG-----------QTAVN 320
            .......:||||     |:|..|.|       |...|.:| ||    |.           |..::
 Worm   517 RKSTIPVDPNAAYMKQKAMMQGLWNVIHSYRVASNPGHWPAGAFIQLPSAKQYPEYYQIIQNPID 581

  Fly   321 SSSL---LDGSTAAVAAAAAAAAAAAAAAGGAAGAAGGAGTIPAVAVNAANAVQAYVNAGVSVGV 382
            ..::   :||.......|                      .|....|..:|| :.:......:.:
 Worm   582 MKTIRMRIDGHQYPQVDA----------------------MINDCRVMFSNA-RDFNEPRSMIHM 623

  Fly   383 DAVIPPQQPAKIKKGVKRKADTTTPTANAFESPYTQMDS-----KSAKIATRRESNRQVIGKK-- 440
            ||:       :::|.|.|..:....|:.....|.|...|     |:.|:.|.:...|. .|||  
 Worm   624 DAI-------QLEKAVLRAYEGMRNTSLGSSIPSTPHSSSSNLMKAMKLKTPKSEVRG-RGKKNF 680

  Fly   441 -GSGYNMSPLGVSGVPGLGGLVAGGVAGVAVAKNKEKLSDAL--------------KSCNEILKE 490
             ||....|                  |.:.:.:::..:.||:              ||..::.:|
 Worm   681 SGSDDEES------------------ARINIQQHQRSMEDAIMQLPIEEQKMWRLFKSMKDVREE 727

  Fly   491 LFSKKHSGYAWPFYKPVDAEMLGLHD------YHDIIKKPMDLGTVKRKMDNREYKSAPEFAADV 549
            ..:           :|:....:.|..      |:|:||||||:..:|.|::||:|.:..:..:|.
 Worm   728 GTN-----------RPLAVNFMRLPSKEEFPAYYDVIKKPMDMMRIKHKLENRQYVTLLDVVSDF 781

  Fly   550 RLIFTNCYKYNPPDHDV-----------VAMGR-------------KLQDVFEMRYANI---PDE 587
            .|:.:|..|:|..|.|:           :.|.|             :|:.:|...:|::   .||
 Worm   782 MLMLSNACKFNETDSDIYKEAVSLQKALLEMKRELDTGDDAPRVQVELRTIFTSIFASLFSKKDE 846

  Fly   588 PVANAAHHHGHGHGHGHGHGHGHGHGHGHGHGHGYGG-----SSSLKHDASDSSSEDSSDTENES 647
                                          .|..|..     :..||.:...||....:..:.:.
 Worm   847 ------------------------------EGKCYSDHLTEFTEVLKANGVPSSEWPFTLDQIKM 881

  Fly   648 NSDEERSARLKMLESKLLGLQEEIRKLSEEASA-------------------------------- 680
            |.|:.|..||..|:.....|.|..|:||:..|:                                
 Worm   882 NIDKCRYRRLDKLQKDFFDLFERARELSKAGSSMYEAACTLQKSFIVERDTRCKDLIHSNAYCVI 946

  Fly   681 --------KKKAKKKLKEKKKSIGGGSGSGSASHHCHATGGGANAGGAGGPGSGGHGSVSVPGGV 737
                    :|:...|.||:....||...:....|............|.                 
 Worm   947 EKDIDEAIEKERSLKAKEEHDEEGGNKPAMVKRHESEVEMEDIEIDGT----------------- 994

  Fly   738 GSLGPGGAGGANLNALLGGSLVGHGGAAVAGGVPNVGALHSQVHDVAMAFSQMAGGGAAAGAG-F 801
                               ..|....|.|:........||  :..:...|....|..|..|.. :
 Worm   995 -------------------KYVAPCYAYVSRSDEKKTPLH--IFRIERTFKDENGEKALQGHWVY 1038

  Fly   802 GAGVTAAGAS----------SGGKAGTLAGALAAGAAAGAGGTTAGSGSSKGAKSKGGRGA---- 852
            ....|...||          :..:...||..|......    .:..:.:||..........    
 Worm  1039 RPEETLHLASRKFMKQEVFLTPFRDTVLAERLRGRCVV----ISLSTYTSKVITEYSEEDVYLCE 1099

  Fly   853 -KGSGAGGVGASNNAAAGNAAGGAAGAAAGAGSVGGVGGAGAAGGGNASKRAK------GSSSAG 910
             |..|.....|........|.....                     ..:||.|      ..::..
 Worm  1100 YKYHGKPKYFAKLRTWPFTAEDEEL---------------------EYTKRTKLMTPKRNLTAVD 1143

  Fly   911 AGGGVGGANASAGGAGARGSSKKKPSQVMNFDSEEEDTAKPMSYDEKRQLSLDINK--LPGDK-- 971
            :.|..|..:....|               ..:.:|||.|       :.::|||:.:  |...|  
 Worm  1144 SDGNEGKDDVIVDG---------------EEEEDEEDRA-------RLEVSLDMERFELEASKDE 1186

  Fly   972 -------------------LGRVVHIIQNREPSLRDSNPDEIEIDFETLKPSTLRELE--SYVAS 1015
                               ||:.|.:..|.:|..     |.::|:      ...||.:  .:.:.
 Worm  1187 ESGKTYFQQIRSETGKFFWLGQCVLVFNNMKPLC-----DVMKIN------KIWREKDGSEWFSG 1240

  Fly  1016 CLRKKTHKKPSGKSKDEQMAEKKQEL-------EKR----LQDVTGQLGASKKTAKKDESASSKV 1069
            |    ...:||....||.....|.|:       |.|    :|.|...:.| |...|:.::..|:.
 Worm  1241 C----WFARPSETIHDEGRLFFKNEVIAVYRNDETRKLCEIQRVCDVMPA-KLYIKQRQTEVSEC 1300

  Fly  1070 EAVQPANPVSSSSSSSDSSSSSSSDSSSSDSSDSEAVLVIPAPTGDGDERPPRKKKSRDSNGSNV 1134
            :.......|:.|:.:.|..|.....|...:.||::.:.:       ...:..||.|:...:.|..
 Worm  1301 DVFVCETMVNGSADTPDDCSLFGFQSIVDEFSDAQTMNL-------DYGKAMRKMKAHKLHVSIP 1358

  Fly  1135 NNPSINVVMGGNLP---SGALSPTTMLMG--------LDHVVNSNTPTSQMSNMLGNANPLTAAA 1188
            |..    |:....|   ...|||  :|.|        ||.:::.:|..|:  ::..:.:|    .
 Worm  1359 NEE----VLFYKQPIKMDKELSP--LLKGEGVMPLDHLDEMMDDDTDGSE--SVSSSIHP----K 1411

  Fly  1189 MLNNNNKTSLPGSNFGGAPAPGNMMHAGAGVPVAGAAVSASTGQQHNKNGPNDLSKVQPGGPINA 1253
            :|..           |..||           .|.....|.||..||    |:          |:|
 Worm  1412 ILKE-----------GSPPA-----------TVQSQTSSVSTPPQH----PS----------ISA 1440

  Fly  1254 ALP---PHSFAGGTATVATSQSSGGIRIASN-----LHKPSGLGGGDLG--------------EH 1296
            .:|   |.         |....||.|..::.     :|:....|.|::.              :.
 Worm  1441 EMPIMTPK---------AVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKK 1496

  Fly  1297 HAALAAALTSGINSTGTAGGGINNNGGSNNNANPLGGSHGDAMVNASLASLASGLKQIPQ----- 1356
            |..:.|.:.:                        :..:..||:..:...:|..|..:|.|     
 Worm  1497 HYEMRAEVVA------------------------VEKAKQDAIKASQAMTLLPGQVRIYQCKWAA 1537

  Fly  1357 FDDPVEQSLASLEFSAGSTGKSGLTDNFLMQQHLMQPAGPQQQQ----------QQQQQQPFGHQ 1411
            .|...:...|.||              .::|.|..|......||          .::..:||   
 Worm  1538 CDSQYDTESALLE--------------HVIQHHTSQIIMDSDQQFVCMWMTCLRNRKDGKPF--- 1585

  Fly  1412 QQQQQQQQQQQQQQQHMD------YVTEL---LSKGAENVGGMNGNHLLNFNLDMAAAYQQK--- 1464
              ....:..:..:::||.      |..:|   ..|...|.|...|..:      ::|.|.|.   
 Worm  1586 --PSLPRLHRHIKEKHMPTAAKNIYSNQLGKNFFKSIPNQGDTPGCRI------VSAPYGQLPTA 1642

  Fly  1465 ------HPQQ--QQQQAHNNGFNVADFGMAGFDGLNMTAASFLDLEPSLQQQQMQQMQLQQQHHQ 1521
                  .|||  ||||.|.||.|         ..:...|...::..|..||...|..|..||||.
 Worm  1643 PSNGGIPPQQQHQQQQHHGNGMN---------GNMQQGAPQVINRHPVSQQMHHQHPQHMQQHHD 1698

  Fly  1522 QQQQQTHQQQQQHQQQHHQQQQQQQL--TQQQLQQQQQQQQQQQHL--QQQQHQQQHHQAANKLL 1582
                  |...|||.||..|...|.|:  .|..:.||.....||.|.  .||..||||.|      
 Worm  1699 ------HHPHQQHYQQGGQPHPQMQMGPPQNGMFQQGSSSSQQYHQAPPQQMIQQQHQQ------ 1751

  Fly  1583 IIPKPIESMMPSPPDKQQLQQHQKVL------------------PPQQSPSDMKLHPNAAAAAAV 1629
                      |.||.:||..|.|.::                  ||.|..|...||         
 Worm  1752 ----------PGPPPQQQQPQMQPIVVTDVGRTVVRAVVPAFVAPPNQIHSRRVLH--------- 1797

  Fly  1630 ASAQAKLVQTFKANEQNLKNASSWSSLASANSPQSHTSSSSSSSKAKPAMDSFQQFRNKAKERDR 1694
            :.|..|.:::...|.|  |:.|.|.....|.:  .:|..:.::......:...:..|..|:|.|.
 Worm  1798 SEAYLKYIESLAQNRQ--KSVSRWERTLGATA--RNTQPAGNARAPSHWIRRIENGRPVAREEDV 1858

  Fly  1695 LKLL 1698
            .|.|
 Worm  1859 TKAL 1862

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fs(1)hNP_001259321.1 Bromo_Brdt_I_like 34..140 CDD:99929 28/110 (25%)
COG5076 387..>593 CDD:227408 52/260 (20%)
Bromo_Brdt_II_like 481..581 CDD:99930 29/143 (20%)
BET 951..1015 CDD:293640 14/88 (16%)
BRD4_CDT <2026..2046 CDD:293710
pbrm-1NP_001021008.1 Bromo_polybromo_I 40..153 CDD:99954
Bromodomain 198..293 CDD:383021
Bromo_polybromo_III 343..443 CDD:99951 27/102 (26%)
Bromo_polybromo_V 535..638 CDD:99946 22/132 (17%)
Bromo_polybromo_V 710..815 CDD:99946 26/115 (23%)
Bromo_polybromo_VI 822..936 CDD:99956 23/143 (16%)
BAH_polybromo 993..1114 CDD:240068 21/162 (13%)
BAH_polybromo 1201..1313 CDD:240068 25/127 (20%)
HMG-box 1451..1503 CDD:238037 7/51 (14%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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