DRSC/TRiP Functional Genomics Resources

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Protein Alignment sws and rssA

DIOPT Version :10

Sequence 1:NP_511075.3 Gene:sws / 31716 FlyBaseID:FBgn0003656 Length:1425 Species:Drosophila melanogaster
Sequence 2:NP_415750.2 Gene:rssA / 945725 ECOCYCID:EG12120 Length:301 Species:Escherichia coli


Alignment Length:241 Identity:72/241 - (29%)
Similarity:119/241 - (49%) Gaps:28/241 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   950 IGLVLGGGGARGAAHIGMLKAIQEAGIPVDMVGGVSIGALMGALWCSERNITTVTQKAREWSKKM 1014
            |||.||.|.|||.:|||::.|:::.||.:|:|.|.|||:|:||.:..:|     .....:|....
E. coli     6 IGLALGSGAARGWSHIGVINALKKVGIEIDIVAGCSIGSLVGAAYACDR-----LSALEDWVTSF 65

  Fly  1015 TKW-FLQLLDLTYPITSMFSG-REFNKTIHDTFGDVSIEDLWIPYFTLTTDITASCHRIHTNGSL 1077
            :.| .|:|:||::....:..| |.||: ..:...:..||:....:..:.|:::.......|.|.|
E. coli    66 SYWDVLRLMDLSWQRGGLLRGERVFNQ-YREIMPETEIENCSRRFAAVATNLSTGRELWFTEGDL 129

  Fly  1078 WRYVRSSMSLSGYMPPLCDPKDGHLLLDGGYVNNLPADVMHNLGAAHIIAIDVGSQDDT-----D 1137
            ...:|:|.|:.|.|.|:.  .:|:.|:||..||.:|..:...|||..:||:|:  |.|.     |
E. coli   130 HLAIRASCSIPGLMAPVA--HNGYWLVDGAVVNPIPISLTRALGADIVIAVDL--QHDAHLMQQD 190

  Fly  1138 LTNY---------GDDLSGWWLLYKKWNPFTS--PVKVPDLPDIQS 1172
            |.::         ||.|.....|.::....|:  .|..|...:|.:
E. coli   191 LLSFNVSEENSENGDSLPWHARLKERLGSITTRRAVTAPTATEIMT 236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
swsNP_511075.3 CAP_ED 174..295 CDD:237999
Crp 484..>610 CDD:440428
CAP_ED 620..719 CDD:237999
Pat_PNPLA6_PNPLA7 935..1240 CDD:132864 72/241 (30%)
rssANP_415750.2 PRK10279 1..300 CDD:182352 72/241 (30%)
Blue background indicates that the domain is not in the aligned region.

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