DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sws and for

DIOPT Version :9

Sequence 1:NP_511075.3 Gene:sws / 31716 FlyBaseID:FBgn0003656 Length:1425 Species:Drosophila melanogaster
Sequence 2:NP_477487.1 Gene:for / 44817 FlyBaseID:FBgn0000721 Length:1088 Species:Drosophila melanogaster


Alignment Length:551 Identity:98/551 - (17%)
Similarity:174/551 - (31%) Gaps:197/551 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   316 LNAELVQNHMRYKSVSTMSGPINS-QTSQSS-----RQAPNG------------------PPMVI 356
            |:.:.:|...||:.:..:...... .|||.|     :.:|..                  ||..:
  Fly   277 LHQQELQLQQRYQQLQQLQAQTQGLYTSQGSPVLYHQPSPGSSQPVAIPGATCHSPTQLQPPNTL 341

  Fly   357 SQMNLMQS-AVSGTGSSGVSVTVTRPPSSPSRHSREEHTLSDPNPNPDGSFHGTTNLFTEVHGDA 420
            :....||| .:||...||...:.|..|..          |.|||           .:.:.....:
  Fly   342 NLQQQMQSLRISGCTPSGTGGSATPSPVG----------LVDPN-----------FIVSNYVAAS 385

  Fly   421 PNADLFHQ----------------QQQQHSVGNLSTRRSSITLMAP---DGSHSCLQT------- 459
            |..:.|.|                |.:.:.:..|.:.......:.|   ..:..|..|       
  Fly   386 PQEERFIQIIQAKELKIQEMQRALQFKDNEIAELKSHLDKFQSVFPFSRGSAAGCAGTGGASGSG 450

  Fly   460 --------PGVTTSIDMRLVQSSAVDSLRKELGLSEED--------SHIIEP------------- 495
                    ||..|....:..|:.   ..::.||:|.|.        .|:..|             
  Fly   451 AGGSGGSGPGTATGATRKSGQNF---QRQRALGISAEPQSESSLLLEHVSFPKYDKDERSRELIK 512

  Fly   496 -------------FVELREL----------EPNVTLITEGNADDVCVWFVMTGTLAVYQSNQDAT 537
                         ..::||:          ..|: :|.||:...:.  :||          :|. 
  Fly   513 AAILDNDFMKNLDLTQIREIVDCMYPVKYPAKNL-IIKEGDVGSIV--YVM----------EDG- 563

  Fly   538 RAKQDKSDMLIHFVHPGEIVGGLAMLTG-----------EASAYTIRSRS----ITRIAFIRRAA 587
            |.:..:....:..:...:::|.||:|..           |.:.:.|..:.    :.|...||:|.
  Fly   564 RVEVSREGKYLSTLSGAKVLGELAILYNCQRTATITAITECNLWAIERQCFQTIMMRTGLIRQAE 628

  Fly   588 IYQIMRQRPRIVLDLGNGVVRRLSPLVRQCDYALDWIFLESGRAVYRQDESSDSTYIVLSGRMRS 652
            ....::..| |..||....:.::|.::.:..|       :.|..:.||....|:.:|:..|::|.
  Fly   629 YSDFLKSVP-IFKDLAEDTLIKISDVLEETHY-------QRGDYIVRQGARGDTFFIISKGKVRV 685

  Fly   653 VITHPGGKKE-IVGEYGKGDLVGIVEMITETSRTTTVMA---------VRDSELAKLPEGLFNAI 707
            .|.....::| .:...||||..|...:..:..||..::.         |.|.|       .||  
  Fly   686 TIKQQDTQEEKFIRMLGKGDFFGEKALQGDDLRTANIICESADGVSCLVIDRE-------TFN-- 741

  Fly   708 KLRYPIVVTKLISFL---SHRF--LGSMQTR 733
                     :|||.|   .||:  .|:|:.|
  Fly   742 ---------QLISNLDEIKHRYDDEGAMERR 763

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
swsNP_511075.3 Crp 168..>310 CDD:223736
CAP_ED 174..295 CDD:237999
Crp 483..>611 CDD:223736 30/186 (16%)
CAP_ED 484..602 CDD:237999 27/176 (15%)
CAP_ED 620..719 CDD:237999 21/108 (19%)
Crp 624..>727 CDD:223736 27/117 (23%)
Pat_PNPLA6_PNPLA7 935..1240 CDD:132864
RssA 940..1222 CDD:224666
forNP_477487.1 DD_cGKI-alpha 385..432 CDD:213374 5/46 (11%)
Crp 518..>627 CDD:223736 19/122 (16%)
CAP_ED 520..629 CDD:237999 20/122 (16%)
Crp 632..>753 CDD:223736 31/146 (21%)
CAP_ED 638..754 CDD:237999 31/140 (22%)
S_TKc 778..1036 CDD:214567
STKc_cGK 783..1043 CDD:270724
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0664
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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