DRSC/TRiP Functional Genomics Resources

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Protein Alignment sws and Pka-R2

DIOPT Version :9

Sequence 1:NP_511075.3 Gene:sws / 31716 FlyBaseID:FBgn0003656 Length:1425 Species:Drosophila melanogaster
Sequence 2:NP_523671.1 Gene:Pka-R2 / 36041 FlyBaseID:FBgn0022382 Length:377 Species:Drosophila melanogaster


Alignment Length:395 Identity:75/395 - (18%)
Similarity:142/395 - (35%) Gaps:115/395 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   341 TSQSSR--QAPNGPPMVISQMNLMQSAVSGTGSSGVSVTVTRPPSSPSRHSREEHTLSDPNPNPD 403
            :|.|||  |.|.....|:.|.:             :|..|.:||.                    
  Fly     2 SSDSSRRIQVPEELKEVLLQFS-------------ISFLVEQPPD-------------------- 33

  Fly   404 GSFHGTTNLFTEVHGDAPNADLFHQQQ---QQHSVGN----------LSTRRSSITLMA------ 449
             ........||::..:.|:..  |..|   .|.||.:          .|:||.|:...|      
  Fly    34 -VIDYAVEYFTKLQSERPSVS--HTDQSTDDQLSVNSQDADAEPPVMASSRRKSVFAEAYDPEAD 95

  Fly   450 --PDGSHSCLQTPGVTTSIDMRLVQSSAVDSLRKELGLSEEDSHIIEPFVELRELEPNVTLITEG 512
              .||:.:....   |.....|||:|.....|.:.|. .|:.:.:::...| |:::|...:|.:|
  Fly    96 DDDDGATAVFPK---TDEQRARLVESVKNVLLFRSLE-KEQMNQVLDAMFE-RKVQPGDFIIRQG 155

  Fly   513 NADDVCVWFVMTGTLAVYQSNQDATRAKQDKSDMLIHFVHPGEIVGGLAMLTGEASAYTIRS--- 574
            :..| ..:.:.:|...||.:::....           :.|.| :.|.||:|.....|.|:::   
  Fly   156 DDGD-NFYVIESGVYKVYINDKHINT-----------YNHTG-LFGELALLYNMPRAATVQAETS 207

  Fly   575 ------------RSITRIAFIRRAAIYQIMRQRPRIV-------LDLGNGVVRRLSPLVRQCDYA 620
                        |.:.:.||.:|....:::...|.:.       ::|.:.:|.:        .| 
  Fly   208 GLLWAMDRQTFRRILLKSAFRKRKMYEELLNSVPMLKALQNYERMNLADALVSK--------SY- 263

  Fly   621 LDWIFLESGRAVYRQDESSDSTYIVLSGRMRSVITHPGGKKEIVGEYGKGDLVGIVEMITETSRT 685
                  ::|..:.:|.:::|..|.:..|.:...:.....:.|| .:.|||...|.:.::|...|.
  Fly   264 ------DNGERIIKQGDAADGMYFIEEGTVSVRMDQDDAEVEI-SQLGKGQYFGELALVTHRPRA 321

  Fly   686 TTVMA 690
            .:|.|
  Fly   322 ASVYA 326

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
swsNP_511075.3 Crp 168..>310 CDD:223736
CAP_ED 174..295 CDD:237999
Crp 483..>611 CDD:223736 26/149 (17%)
CAP_ED 484..602 CDD:237999 23/139 (17%)
CAP_ED 620..719 CDD:237999 15/71 (21%)
Crp 624..>727 CDD:223736 15/67 (22%)
Pat_PNPLA6_PNPLA7 935..1240 CDD:132864
RssA 940..1222 CDD:224666
Pka-R2NP_523671.1 DD_RII_PKA 11..49 CDD:213046 9/71 (13%)
CAP_ED 124..233 CDD:237999 24/123 (20%)
CAP_ED 242..356 CDD:237999 18/101 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0664
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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