DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sws and CG4839

DIOPT Version :9

Sequence 1:NP_511075.3 Gene:sws / 31716 FlyBaseID:FBgn0003656 Length:1425 Species:Drosophila melanogaster
Sequence 2:NP_609349.1 Gene:CG4839 / 34348 FlyBaseID:FBgn0032187 Length:1003 Species:Drosophila melanogaster


Alignment Length:839 Identity:157/839 - (18%)
Similarity:282/839 - (33%) Gaps:223/839 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   132 LRRDNMPLEMRTVEPPA-----EYLEETIEGSDRVPPDALYMLQSIRIFGHFEKPVFLRLCKHTQ 191
            :||:..||....|.|.|     :.|.:..:.....|..|.:.|.|:...|.....|..|..: |.
  Fly    41 IRREEKPLYSPIVTPSASEAKLQRLRQQQQPPGSPPAPARWTLHSVAENGSANNGVQERKFR-TN 104

  Fly   192 LLELMAGDYLFKITDPDDSVYIVQSG--MINVYISNA---------------DGSTLSLKTVR-- 237
            ..:|.|.|             ...||  .|||..|::               :..::.::.||  
  Fly   105 KDKLQAQD-------------ACPSGGSAINVIRSSSKLKPVKERRPTALPTEVPSIEIEDVRDA 156

  Fly   238 --KGESVTSL--------LSFIDVL-SGNPSYYKTVTAKAIEKSVVIRLPMQAFEEVFQDNPDVM 291
              .|:.:.||        .:.:||: .|..|..|......|::||       |.::.: |.|...
  Fly   157 KDTGDGMDSLGERVQPGANAHVDVVDGGGKSKLKVNVNGIIDESV-------AHDDDY-DTPSSN 213

  Fly   292 IRVIQVIMIRLQRVLFTALRNYLGLNAELVQNHMRYKSVSTMSGPINSQTSQSSRQAPNG----- 351
                   .|....|....::.::|...||    ...::..|:|...:...:.|:.:..||     
  Fly   214 -------SIATTPVTEGPVKFFIGHTQEL----SAQQTDDTLSCQSSDANNNSAAKLTNGVVPQE 267

  Fly   352 -PPMVISQMNLMQSAVSGTGSSGVSVTVTRPPSSPSRHSREEHTLSDPN-----PNPDGSFHGTT 410
             |...:.:...:|:......||.||:.......:.|:..|...|:.|.|     |.|.......|
  Fly   268 QPEREMGKQQALQAPPRAKSSSNVSLNYLAKSQTDSQRRRRVSTMPDINIPPAPPLPPELLVPGT 332

  Fly   411 NLF---------------------TEVHGDAPNA-DLFHQQQQQHSVGNLSTRRS---------- 443
            .|.                     .|:..||.|: |.....::.|...:.||.::          
  Fly   333 PLHLRKKRSMERQQQQKQQEQQQQQEIQQDATNSQDQMAGAEESHKSSDSSTPKTHRVEGGLIYV 397

  Fly   444 ----------SITLMAPD-GSHSCLQTPGVTTSIDMRLVQSSAVDSLRKELGLS-------EEDS 490
                      .|..:|.| |:.:.::     |:|:.....::.:|..|||:.::       .:.|
  Fly   398 RPNFPIQSDIEIESIAKDEGTRNLIR-----TAIERNDFLNNLMDKERKEMVINAMAPASYRKHS 457

  Fly   491 HIIEPFVELRELEPNVTLITEGNADDVCVWFVMTGTLAVYQSNQDATRAKQDKSDMLIHFVHPGE 555
            .||....|..|    :.:..||..|.:                         :...|:....|..
  Fly   458 LIIREHEEGSE----IYVSAEGQYDVI-------------------------RGGQLVASFGPAT 493

  Fly   556 IVGGLAMLTGEASAYTIRSRSITRIAFIRR---AAIYQIMRQRPRIVLDLGNGVVRRLSPLVRQC 617
            :.|.||:|.......:|.:.:..|:..|.|   .||.||...|.|    ..|....|.:|.:::.
  Fly   494 VFGELAILYNAPRQASIEAATDARVWKIARETFRAIMQISGSRER----EENLQFLRSAPFLQEF 554

  Fly   618 DYAL-----DWI---FLESGRAVYRQDESSDSTYIVLSGRMRSVITHPGGKKEIVGEYGKGDLVG 674
            |.:|     |.:   |.|:...:.|:.|..:..||:..|.:.........:::||....:||..|
  Fly   555 DQSLLLKVVDLLQRKFYETDSCIVREGELGNEFYIIRCGTVTIKKLDEQQQEQIVANRKRGDYFG 619

  Fly   675 IVEMITETSRTTTVMA-VRDSELAKLPEGLFNAIKLRYPIVVTKLISFLSH----RFLGSMQTRS 734
            ...::....|..:|.| ...:|:..|....|              ||:|..    |...|.|...
  Fly   620 EQALLNADVRQASVYADAPGTEVLMLDREAF--------------ISYLGTIKQLREKPSSQRND 670

  Fly   735 GSGAPGAPVEANPVTHKYSTVALVPIT----------DEVPMTPFTYELYHSLCAIGPVLRLTSD 789
            .||.  :..::....::||.||:..:.          ..|.:..:..:      |:...:....:
  Fly   671 TSGR--SSTKSLEFDNEYSQVAISELKKIATLGCGAFGRVDLVAYNQQ------ALALKIIKKIE 727

  Fly   790 VVRKQLGSNIFEAAN---EYRLTSWLAQ-----QEDRNIITLYQCDSSLSAWTQRCMRQ 840
            ||::....:::...|   :.|.:.::.|     :.|:.:..|.:.......||....||
  Fly   728 VVKQDQIEHVYNEKNVMIKCRQSPFIVQLYRTYRNDKYVYFLMEACMGGDVWTVMSKRQ 786

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
swsNP_511075.3 Crp 168..>310 CDD:223736 33/171 (19%)
CAP_ED 174..295 CDD:237999 29/150 (19%)
Crp 483..>611 CDD:223736 26/137 (19%)
CAP_ED 484..602 CDD:237999 24/127 (19%)
CAP_ED 620..719 CDD:237999 20/107 (19%)
Crp 624..>727 CDD:223736 22/110 (20%)
Pat_PNPLA6_PNPLA7 935..1240 CDD:132864
RssA 940..1222 CDD:224666
CG4839NP_609349.1 Crp 428..577 CDD:223736 36/181 (20%)
CAP_ED 431..539 CDD:237999 28/140 (20%)
Crp 544..>650 CDD:223736 22/105 (21%)
CAP_ED 550..663 CDD:237999 25/126 (20%)
S_TKc 695..951 CDD:214567 13/98 (13%)
STKc_cGK 700..957 CDD:270724 13/93 (14%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0664
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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