DRSC/TRiP Functional Genomics Resources

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Protein Alignment sws and Prkar2a

DIOPT Version :9

Sequence 1:NP_511075.3 Gene:sws / 31716 FlyBaseID:FBgn0003656 Length:1425 Species:Drosophila melanogaster
Sequence 2:NP_062137.1 Gene:Prkar2a / 29699 RGDID:3393 Length:401 Species:Rattus norvegicus


Alignment Length:389 Identity:81/389 - (20%)
Similarity:139/389 - (35%) Gaps:119/389 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   373 GVSVTVTR--PPS---------SPSRHSREEHTLSDPNPNPDGSFHGTTNLFT-------EVHGD 419
            |.:|.|.|  ||.         :..|.:|.:.  ||....|..:||...:...       |...|
  Rat    16 GYTVEVLRQQPPDLVDFAVEYFTRLREARRQE--SDSFIAPPTTFHAQESSGVPVIEEDGESESD 78

  Fly   420 APNADLFHQQQQQHSVGNLSTRRSSITLMAPDGSHSCLQT--PGVTTSIDMRLV----------- 471
            :.:.||      :..:.:..|||.|:          |.:|  |......|.|:|           
  Rat    79 SDDEDL------EVPIPSKFTRRVSV----------CAETFNPDEEEDNDPRVVHPKTDEQRYRL 127

  Fly   472 QSSAVDSLR-KELGLSEEDSHIIEPFVELRELEPNVTLITEGNADDVCVWFVM---TGTLAVYQS 532
            |.:..|.|. |.|. .|:.|.:::...| :.::.:..:|.:|  ||...::|:   |..:.|.:.
  Rat   128 QEACKDILLFKNLD-QEQLSQVLDAMFE-KIVKTDEHVIDQG--DDGDNFYVIERGTYDILVTKD 188

  Fly   533 NQDATRAKQDKSDMLIHFVHPGEIVGGLAMLTGEASAYTIRSRS------ITRI----------- 580
            ||..:..:.|.....          |.||::.....|.||.:.|      :.|:           
  Rat   189 NQTRSVGQYDNRGSF----------GELALMYNTPRAATIVATSDGSLWGLDRVTFRRIIVKNNA 243

  Fly   581 -------AFIRRAAIYQI--MRQRPRIVLDLGNGVVRRLSPLVRQCDYALDWIFLESGRAVYRQD 636
                   :||....:::.  |.:|.:||..:|..:.:                   .|..:..|.
  Rat   244 KKRKMFESFIESVPLFKSLEMSERMKIVDVIGEKIYK-------------------DGERIITQG 289

  Fly   637 ESSDSTYIVLSG------RMRSVITHPGGKKEI-VGEYGKGDLVGIVEMITETSRTTTVMAVRD 693
            |.:||.||:.||      |.::.....||.:|: :....||...|.:.::|...|..:..||.|
  Rat   290 EKADSFYIIESGEVSILIRSKTKTNKNGGNQEVEIAHCHKGQYFGELALVTNKPRAASAYAVGD 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
swsNP_511075.3 Crp 168..>310 CDD:223736
CAP_ED 174..295 CDD:237999
Crp 483..>611 CDD:223736 29/156 (19%)
CAP_ED 484..602 CDD:237999 27/146 (18%)
CAP_ED 620..719 CDD:237999 21/81 (26%)
Crp 624..>727 CDD:223736 21/77 (27%)
Pat_PNPLA6_PNPLA7 935..1240 CDD:132864
RssA 940..1222 CDD:224666
Prkar2aNP_062137.1 Dimerization and phosphorylation 2..135 29/136 (21%)
DD_RIIalpha_PKA 4..44 CDD:213050 7/27 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 55..85 6/35 (17%)
Crp 132..>241 CDD:223736 25/122 (20%)
CAP_ED 136..248 CDD:237999 23/125 (18%)
Crp 252..>368 CDD:223736 28/121 (23%)
CAP_ED 258..379 CDD:237999 26/115 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0664
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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