DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ykt6 and Vamp7

DIOPT Version :9

Sequence 1:NP_572423.1 Gene:Ykt6 / 31706 FlyBaseID:FBgn0260858 Length:199 Species:Drosophila melanogaster
Sequence 2:NP_001286255.1 Gene:Vamp7 / 36015 FlyBaseID:FBgn0266186 Length:218 Species:Drosophila melanogaster


Alignment Length:131 Identity:35/131 - (26%)
Similarity:63/131 - (48%) Gaps:9/131 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 YMCHVYVRADNLAGVLIADHEYPHRVAHTLITKILDDFTAK-----VSADQWPNGTEATISFDLL 124
            |:.| |...:.|..:.|.|:|:....|...:..|...|...     .:|..:...||.:   .:|
  Fly    50 YLIH-YTCENKLVYMCITDNEFERSRAFLFLADIKQKFIQTYGLQVATAIAYSMNTEFS---KIL 110

  Fly   125 PAFLARYQNPVEADPLTKMQNDLDETKIILKNTIEAVLERGEKLDDMVSKSEKLSLQSKAFYKTA 189
            ...:..:....|.|.::::...:||.|.|:...|:::.:|||||:.:|:|:|.||..|.||.|.:
  Fly   111 AQQMVYFSQSREVDTISRVHGQIDELKDIMVKNIDSLRDRGEKLELLVNKTENLSNNSVAFRKAS 175

  Fly   190 K 190
            :
  Fly   176 R 176

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ykt6NP_572423.1 SNC1 4..196 CDD:227472 35/131 (27%)
Vamp7NP_001286255.1 Longin 32..97 CDD:290490 10/47 (21%)
Synaptobrevin 122..210 CDD:279324 21/55 (38%)
R-SNARE_VAMP7 124..188 CDD:277224 20/53 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45448294
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5143
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

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