DRSC/TRiP Functional Genomics Resources

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Protein Alignment hdm and RPA70D

DIOPT Version :9

Sequence 1:NP_572422.1 Gene:hdm / 31705 FlyBaseID:FBgn0029977 Length:486 Species:Drosophila melanogaster
Sequence 2:NP_200908.1 Gene:RPA70D / 836221 AraportID:AT5G61000 Length:629 Species:Arabidopsis thaliana


Alignment Length:328 Identity:60/328 - (18%)
Similarity:124/328 - (37%) Gaps:80/328 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   143 PIRPLGAVLKLADVRSGLGFPDKIITTNVNLLVVVAAVRPVRQIKRKLQGPLSEVQELLQCLEVI 207
            ||..||..:...::              ::|:.||.:|.|...|:|:..      .|::...::.
plant   303 PIEELGLYVNQKEL--------------IDLIGVVQSVSPTMSIRRRTD------NEMIPKRDIT 347

  Fly   208 VIDASYPEGMLLSVWQ-------PDWIQRAQQWQPRRTVLHLIDVRVSYSNFHRSLVLSHSNCTL 265
            :.|.| .:.:::|:|.       .:.:..|.|    ..|:.:..::|..........:|.||..:
plant   348 LADES-RKTVVVSLWNDLATGIGQELLDMADQ----SPVIAIKSLKVGDFQGVSLSTISRSNVVI 407

  Fly   266 ICENPQAAGDDCRLLLAFAATVPLTTFSGCDQAELDNMPAVA---SIQAQMTVRQIYS---RAEG 324
            ..|:|:|.              .|.::...:..|: :|.::.   |..|:...|.:|:   ....
plant   408 NPESPEAK--------------KLKSWFDSEGKEI-SMSSIGSGMSPSAKNGSRSLYTDRVLLSH 457

  Fly   325 ELQDPSIHQFTAVLYGMVTKFDLDGLTSHVN-------RKCIACQQHIPRNLQD---CASDACQQ 379
            ...:||:.:...|.      |......|.:.       :.|..|.:.:...|..   |  :.||:
plant   458 ITSNPSLFEEKPVF------FSTRAYISFIKPDQTMWYQACKTCNKKVTEALDSGYWC--EGCQR 514

  Fly   380 YFSLDNDEPRSISYFNINIHLSDQTG-TLVEARLAGHPAERILGLRAEDFERLAEREKSELKWRF 443
            .:     |..|:.|. :.:.::|.:| |.:.:  ....||:|||..|::..:|...|....:::.
plant   515 KY-----EECSLRYI-MAVKVTDSSGETWISS--FNDEAEKILGCSADELNKLKSEEGEVNEYQT 571

  Fly   444 LLK 446
            .||
plant   572 KLK 574

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hdmNP_572422.1 None
RPA70DNP_200908.1 rpa1 4..622 CDD:273177 60/328 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1599
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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