Protein Alignment hdm and RPA1A

DIOPT Version :10

• Sequence 1: NP_572422.1
• Gene: hdm / 31705
• FlyBaseID: FBgn0029977
• Length: 486
• Species: Drosophila melanogaster
• Sequence 2: NP_178690.1
• Gene: RPA1A / 815209
• AraportID: AT2G06510
• Length: 640
• Species: Arabidopsis thaliana
• Alignment Length: 504
• Identity: 105/504 - (20%)
• Similarity: 176/504 - (34%)
• Gaps: 117/504 - (23%)

  Fly    10 LAEMRPTMTRFSTVALIVSKSSPNIFYDKMSGTERGVLSLTIRDSPNHLTNCKCWGQRDCVDEYA 74
            :|.:.|...|::..|.:.:|.... .|:...|..: |.|..:.|.........|:..  .||.:.
plant   200 IAALNPYQGRWAIKARVTAKGDIR-RYNNAKGDGK-VFSFDLLDYDGGEIRVTCFNA--LVDRFY 260

  Fly    75 AMLQIGHVVDIVGAKVMSIPFAAPGEQRYQPQATVSCALVVNE-----GSGYVVRHDNDDFGQIT 134
            .:.::|.|.      ::|.....|.::.:..        :.||     .|...|....|:.|.|.
plant   261 DVTEVGKVY------LISKGSLKPAQKNFNH--------LKNEWEIFLESTSTVELCPDEDGSIP 311

  Fly   135 ILQQLLHQPIRPLGAVLKLADVRSGLGFPDKIITTNVNLLVVVAAVRPVRQIKRK---------- 189
             .||...:||         :|:.:...      .|.::::.||.:|.|...|.||
plant   312 -KQQFSFRPI---------SDIENAEN------NTILDVIGVVTSVNPSVPILRKNGMETHRRIL 360

  Fly   190 -LQGPLSEVQELLQCLEVIVIDASYPEGMLLSVWQPDWIQRAQQWQPRRTVLHLIDVRVSYSNFH 253
             |:....:..|:....|....|....|.|:.|.:.|              ||.:...:|  |:|.
plant   361 NLKDESGKAVEVTLWGEFCNRDGRQLEEMVDSAFHP--------------VLAIKAGKV--SDFS 409

  Fly   254 RSLVLSHSNCTLICENPQAAGDDCRLLLAFAATVPLTT---FSGCDQAEL----DNMP-AVASIQ 310
            ...|.:.|:..|.. ||.           |.....|.|   :.|.|.|..    |.|| .|:..:
plant   410 GKSVGTISSTQLFI-NPD-----------FPEAHKLRTWFDYGGKDTASFSISRDTMPGGVSRNE 462

  Fly   311 AQMTVRQIYSRAEGELQDPSIHQFTAVLYGMVT-KFDLDGLTSHVNRKCIACQQHIPR---NLQD 371
            .:..|.||.....|....|......|.:..:.| .|........:..|  .|.:.:.|   |...
plant   463 IRKNVSQIKEEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDK--QCNKKVTRSGTNRWL 525

  Fly   372 CASDACQQYFSLDNDEPRSISY-FNINIHLSDQTG-TLVEA------RLAGHPAERILGLR--AE 426
            |  |.|.|    ::||   ..| :.:.:.:.|.|| |.:.|      .:.|.||:::..::  .|
plant   526 C--DRCNQ----ESDE---CDYRYLLQVQIQDHTGLTWITAFQETGEEIMGCPAKKLYAMKYELE 581

  Fly   427 DFERLAEREKSELKWRFLLKYFEVRLMIK-KPVGVRNHLVIVVVDMQAI 474
            ..|..||..:..|..:::||     |.|| :..|....:.:.||.:..:
plant   582 KEEEFAEIVRDRLFHQYMLK-----LKIKEESYGDEQRVKMTVVKVDKV 625

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
hdm	NP_572422.1	None
RPA1A	NP_178690.1	rpa1	3..638	CDD:273177	105/504 (21%)