DRSC/TRiP Functional Genomics Resources

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Protein Alignment hdm and rpa-1

DIOPT Version :9

Sequence 1:NP_572422.1 Gene:hdm / 31705 FlyBaseID:FBgn0029977 Length:486 Species:Drosophila melanogaster
Sequence 2:NP_495606.1 Gene:rpa-1 / 174238 WormBaseID:WBGene00017546 Length:655 Species:Caenorhabditis elegans


Alignment Length:505 Identity:109/505 - (21%)
Similarity:190/505 - (37%) Gaps:140/505 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 SGTERGVLSLTIRDSPNHLTNCKCWGQRDCVDEY----AAMLQIGH--VVDIVGAKVMSIPFAAP 98
            |.|||||:.:.: .:| :::|.|..|.....:|.    |...::.:  :.|..|..:....|...
 Worm   217 SNTERGVMPIAM-VTP-YVSNFKIHGMVSRKEEIRTFPAKNTKVFNFEITDSNGDTIRCTAFNEV 279

  Fly    99 GEQRYQPQATVSCALVVNEGSGYVVRHDNDDFG------QITILQ--------QLLHQPIRPLGA 149
            .|..| ...|.:.:..::.||   |:..|..|.      :||:..        :||..|...|..
 Worm   280 AESLY-TTITENLSYYLSGGS---VKQANKKFNNTGHDYEITLRSDSIIEAGGELLAAPKLILKR 340

  Fly   150 VLKLADVRSGLGFPDKIITTNVNLLVVVAAVRPVRQ----------IKRKLQGPLSEVQELLQCL 204
            | ||.::   .|:..::|    ::||||..:.|...          |||:::             
 Worm   341 V-KLGEI---AGYAGQLI----DVLVVVEKMDPEATEFTSKAGKSLIKREME------------- 384

  Fly   205 EVIVIDASYPEGML--LSVW--------QPDWIQRAQQWQ---PRRTVLHLIDVRVSYSNFHRSL 256
               :||.|   |.|  |::|        ..|::|:...::   ||              .|:...
 Worm   385 ---LIDES---GALVRLTLWGDEATKALVDDYVQKVIAFKGVIPR--------------EFNGGF 429

  Fly   257 VLSHSNCTLICENPQAAGDDCRLLLAFAATVPLTTFSGCDQAELDNMPAVASIQAQMTVRQIYSR 321
            .|...:.|.|...|:.||  ...|..:.|.|..||     :.::.:..|..|.:|..|:..:...
 Worm   430 SLGTGSATRIISVPEIAG--VSELYDWYANVKPTT-----EVKMMSQAAGGSNEAPRTIAGLQEM 487

  Fly   322 AEGELQDPSIHQFTAVLYGMVTKFDLDGLTSHVNRKCIACQQHIPRN--LQDCASDACQQYFSLD 384
            ..|:..|...:   |.:..|:|:         ||          |.|  .:.|||:.||:....:
 Worm   488 QFGKDSDKGDY---ATVKAMITR---------VN----------PTNALYRGCASEGCQKKLVGE 530

  Fly   385 NDEPR------SISYFN----INIHLSDQTGTLVEARLAGHPAERILGLRAEDFERLAEREKSEL 439
            |.:.|      :::.|.    :...|||:||. |.....|..|.:|:|..|.:...|.:....|.
 Worm   531 NGDYRCEKCNKNMNKFKWLYMMQFELSDETGQ-VYVTAFGDSAAKIVGKSAAELGELHDESPDEY 594

  Fly   440 -----KWRFLLKYFEVRL-MIKKPVGVRNHLVIVVVDMQAIPLEKLVANM 483
                 :.:|:.|.:.:|. |......||..:.:..||  .:..:|.:.|:
 Worm   595 NAIFERLQFVPKMWRLRCKMDSYNEEVRQKMTVYGVD--DVNQDKYIENL 642

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hdmNP_572422.1 None
rpa-1NP_495606.1 rpa1 12..648 CDD:273177 109/505 (22%)
RPA1_DBD_A 225..325 CDD:239920 19/105 (18%)
RPA1_DBD_B 353..455 CDD:239921 28/140 (20%)
Rep_fac-A_C 498..642 CDD:285809 37/168 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1599
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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