DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment snz and snx20

DIOPT Version :10

Sequence 1:NP_572421.1 Gene:snz / 31704 FlyBaseID:FBgn0029976 Length:1117 Species:Drosophila melanogaster
Sequence 2:XP_005163245.2 Gene:snx20 / 794759 ZFINID:ZDB-GENE-100806-1 Length:309 Species:Danio rerio


Alignment Length:135 Identity:26/135 - (19%)
Similarity:55/135 - (40%) Gaps:38/135 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   683 APVQPTSSKNGDSGHANLRKRPSGISSGWVVMRSLNQVHELQRKLRHVSSNLKAI----DLPTN- 742
            :|.|.|...||:|...:|....|.:::.           |||:..|.|....:::    |:|:. 
Zfish    24 SPHQETLQGNGESAEDDLCFGASCLTTA-----------ELQQHWRAVKQEFRSVKLLFDIPSAR 77

  Fly   743 -----------FKFFFLKTDRHGQEKAKSQIQKFLNFILEDDHLNGSEAIYTFLSPSSDHLKQSL 796
                       ::...:::..:..|:...: :::.:|:    ||:     ...||..|:.| :.:
Zfish    78 IISQTISKHVVYQVVVIRSGSYDCERVAIE-RRYSDFL----HLH-----QELLSDFSEEL-EDV 131

  Fly   797 PSPKK 801
            ..|||
Zfish   132 VFPKK 136

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snzNP_572421.1 PXA 142..300 CDD:460484
RGS_SNX25 422..531 CDD:188675
PX_SNX25 645..788 CDD:132788 21/120 (18%)
Nexin_C 882..987 CDD:462541
snx20XP_005163245.2 None
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.