DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment snz and Snx29

DIOPT Version :9

Sequence 1:NP_001284993.1 Gene:snz / 31704 FlyBaseID:FBgn0029976 Length:1117 Species:Drosophila melanogaster
Sequence 2:XP_006522729.1 Gene:Snx29 / 74478 MGIID:1921728 Length:819 Species:Mus musculus


Alignment Length:493 Identity:99/493 - (20%)
Similarity:161/493 - (32%) Gaps:179/493 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   283 PMIKMLTAPDYINQKVVQNIETRLAAAAMSKRSYEYAASFEDFLKIINNS------GNLE----- 336
            |:..:|.:........|.  |.|.|..||..|        :|.|:..|.|      |.:|     
Mouse   454 PLSSLLPSASVPESMTVH--ELRQAIVAMMNR--------KDELEEENGSLRNLLDGEMEHSAAL 508

  Fly   337 --ELSLIRKSIVNDL-MHATTMQNLQRAKGLDPDHEDHSLSKSELTAAVRLKRYVRQLTMAK--G 396
              |:..:|:.:.... .|||.:|.|.|        |:..|.       |:||:||..:.|.|  |
Mouse   509 RQEVDALRRKVTEQQERHATKVQALAR--------ENEVLK-------VQLKKYVGAVQMLKREG 558

  Fly   397 ECEKNLAKFGWNGNYSSDIDLTLVEILNTAVGRRYFTLFLEPLKASALIGFYLAVEEIKHAHKSA 461
            :..:.:... ||    .|.::|:.|                                        
Mouse   559 QTAEAVPSL-WN----VDAEVTVPE---------------------------------------- 578

  Fly   462 SHQLGTEIFYTYIRVPKSEIQIDKHERKLIETFLLGDAEPDIFYDIQRNVLRTLEEKYYPPFVLS 526
              |...|:         :|.....:||||||.     ||       ....|....|:.:...|  
Mouse   579 --QKPGEV---------AEELASSYERKLIEV-----AE-------MHGELIEFNERLHRALV-- 618

  Fly   527 DQYRQLKEALDS---NEIADPTLLMCHTIGDVQEPLADEQ----------------PGAADGLNG 572
                 .||||.|   .|:.|   |.....||:.:...|:.                |...  |.|
Mouse   619 -----AKEALVSQMRQELID---LRGPVPGDLSQTSEDQSLSDFEISNRALINVWIPSVF--LRG 673

  Fly   573 GAGGAIDVAAHTSYAR---------RKLEQIQERIDKKNQALDALK-YSVKPESKVLTILEKEME 627
            .|..|..|  :..|.|         |:..:.:....:...|...:: ||..|:.   .|..|:.:
Mouse   674 KAANAFHV--YQVYIRIKDDEWNVYRRYTEFRALHHQLQSAFPQVRAYSFPPKK---AIGNKDAK 733

  Fly   628 WLKSEKRQTEAHLRRTDAWTEHLGKWKATIQSVEVSDEKESLQFMILVHVDEDINAPVQPTSSKN 692
            :::..::|.:::||..      :.|....:.....:.:||:|..::...|  ||..|.:|     
Mouse   734 FVEERRKQLQSYLRSV------MNKVIQMVPEFAANPKKETLVQLVPFFV--DITPPGEP----- 785

  Fly   693 GDSGHANLRKRPSGISSGWVVMRSLNQVHELQRKLRHV 730
                 .|...||..:|.    ...|::.|  .|::|:|
Mouse   786 -----LNKSSRPKAVSR----FPKLSRGH--PREVRNV 812

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snzNP_001284993.1 PXA 142..299 CDD:280373 2/15 (13%)
RGS_SNX25 422..531 CDD:188675 14/108 (13%)
PX_SNX25 645..788 CDD:132788 18/86 (21%)
Nexin_C 882..987 CDD:285792
Snx29XP_006522729.1 RUN 44..177 CDD:367169
Smc <472..>634 CDD:224117 56/262 (21%)
PX_RUN 662..779 CDD:132810 23/131 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2101
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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