DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment snz and Snx29

DIOPT Version :9

Sequence 1:NP_001284993.1 Gene:snz / 31704 FlyBaseID:FBgn0029976 Length:1117 Species:Drosophila melanogaster
Sequence 2:XP_038942785.1 Gene:Snx29 / 689142 RGDID:1596162 Length:838 Species:Rattus norvegicus


Alignment Length:743 Identity:130/743 - (17%)
Similarity:235/743 - (31%) Gaps:235/743 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   371 HSLSKSELTAAV-------------RLKRYVRQLTMAKGECEKNLAKFGWNGNYSSDIDLTLVEI 422
            |..:.|.||..:             |.:..:.:|..|..:|:   .:||.....:||.|..:   
  Rat     4 HRFTPSSLTLLLLSQDRSPGLQNDDRRQFLLERLLDAVKQCQ---IRFGGRKEIASDSDSRV--- 62

  Fly   423 LNTAVGRRYFTLFLEPLKASALIGFYLAVEEIKHAHKSASHQLGTEIFYTYIRVPKSEIQIDKHE 487
              |.:..::..:....:|.|.  |..|....||.|....|......:|:.|::    |: :.|||
  Rat    63 --TCLCAQFEAVLQHGMKRSR--GLALTAAAIKQAAGFTSKTETEPVFWVYVK----EV-LSKHE 118

  Fly   488 RKLIETFLLGDAEPDIFYDIQ-------------RNVLRTLEEKYYPPFVLSDQYRQLKEALDSN 539
            .:.             ||.:.             |..|.....:.|...:|:|:.|.      |.
  Rat   119 LQR-------------FYSLHHITADVGRGRAWLRCALNEHSLERYLHMLLADRTRL------ST 164

  Fly   540 EIADPTLLMCHTIGDVQEPLADEQPGAADGLNGGAGGAI---------DVAAHTSYA-------R 588
            ...|.:.:|       .|..:...|..|.|||     :|         |:...:.:|       :
  Rat   165 FYEDWSFVM-------DEERSSMLPTMAAGLN-----SILFAINIDNKDLNGQSKFAPTVSDLLK 217

  Fly   589 RKLEQIQERIDKKNQALDALKYSVKPESKVLTILEKEMEW---------------LKSEKRQTE- 637
            ...:.:...:.:..|.:.:|...:...|.|..:::.|.|.               .|.|:|:.: 
  Rat   218 ESTQNMTSLLKESTQGMSSLLREITASSAVSILIKPEQETDPLPVISKNVHVDARCKRERRRRKK 282

  Fly   638 -AHLRRTDAWTEHLG------KWKATIQSVEVSDEKESLQFMI---------------------- 673
             .::...|...|..|      |...|.:|.|.:.::.|:..|.                      
  Rat   283 VTNIVSFDDDDEEQGAGDTLKKMPGTAESSEENSDRSSVNIMAAFEGPFGPNSNGSQSSNSWKMD 347

  Fly   674 --------------LVHVDEDINAPVQPTSSKNGDSGHANLRKRPSGISSGWVVMRSLNQVH--- 721
                          :..:|:|::...:.........||...::.|.....|   ..||.|||   
  Rat   348 SASLNGELGYQKLDVKSIDDDVDESEEAVYRNPLGRGHTGHKESPDRTLDG---NASLPQVHGWA 409

  Fly   722 ELQRKLRHVSSNLKAIDLPTNFKFFFLKTDRHGQEKAKSQIQKFLNFILEDDHLNGSEAIYTFLS 786
            .||  :.|..:     |..|:..|.......:|  .|.:.:....|....:||          :.
  Rat   410 PLQ--VLHGDA-----DADTDILFPVSGVGSYG--TADAPVGSLENGTGTEDH----------IL 455

  Fly   787 PSSDHLKQSLPSPKKSKFSLSTLFRS----DAGKAHEASKATDPFWGLQRDDEDISTYLDGESGG 847
            |......:...||.:.. .||:|..|    ::...||..:|....  :.|.||     |:.|:|.
  Rat   456 PEPGLRYREAGSPGRGS-PLSSLLPSASVPESMTVHELRQAIVAM--MNRKDE-----LEEENGS 512

  Fly   848 EAKMLAADLDSKDSIAEPMYALMGEIFDMGGVFKWLRKSLISFVQITYGRTINRQIRESVA---- 908
            ...:|..:::...::.:.:.||..::.:.               |..:...:....||:..    
  Rat   513 LRNLLDGEMEHSAALRQEVDALRRKVTEQ---------------QERHATKVQALARENEVLKVQ 562

  Fly   909 ---YLFEESML--HNYFSAILKSFW------------PGGV---LASAYPTRSEDMREM------ 947
               |:....||  ....:.::.|.|            ||.|   |||:|..:..::.||      
  Rat   563 LKKYVGAVQMLKREGQTAEVVPSLWNVDAEVTVPEQKPGEVAEELASSYERKLIEVAEMHGELIE 627

  Fly   948 ------TTTAAKALLTDHIPEVLCNLVG 969
                  ....||..|...:.:.|.:|.|
  Rat   628 FNERLHRALVAKEALVSQMRQELIDLRG 655

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snzNP_001284993.1 PXA 142..299 CDD:280373
RGS_SNX25 422..531 CDD:188675 22/121 (18%)
PX_SNX25 645..788 CDD:132788 30/187 (16%)
Nexin_C 882..987 CDD:285792 23/124 (19%)
Snx29XP_038942785.1 RUN 64..197 CDD:397055 32/170 (19%)
COG1340 489..654 CDD:224259 33/186 (18%)
PX_RUN 681..798 CDD:132810
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2101
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.