DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment snz and Snx14

DIOPT Version :9

Sequence 1:NP_001284993.1 Gene:snz / 31704 FlyBaseID:FBgn0029976 Length:1117 Species:Drosophila melanogaster
Sequence 2:XP_038937462.1 Gene:Snx14 / 315871 RGDID:1310921 Length:984 Species:Rattus norvegicus


Alignment Length:1137 Identity:227/1137 - (19%)
Similarity:398/1137 - (35%) Gaps:363/1137 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 RRLPLFPIEPEPSVTATQRLTLLATRLLRALQLNWRIIVSGITL-------TLLAVIWYYPTFFL 71
            |:.|||..    .:......:||..|.|..|.:.|..:...:|.       :||      |..|.
  Rat    53 RQYPLFCF----LLLCLSAASLLLNRYLHVLMIFWSFVAGVVTFYCSLGPDSLL------PNIFF 107

  Fly    72 FFAFVVYSLVL--VF-----AAVAGTVYIHYIFTTNEPTPPSRVPSRLLYNATKSNIFDLPKPIK 129
            ...:....|.|  :|     .||.|.|..           ....||.||.|.         :|. 
  Rat   108 TIKYKPKQLGLQELFPQGHSCAVCGKVKC-----------KRHRPSLLLENY---------QPW- 151

  Fly   130 NPSNLPLIFGKTVDLQLQQIIEYVLRDFMLPWLGYVVTKPKLINDV---VREDLWNAIQKIHERA 191
                |.|.....||..|.:::|.||.:|:.||...|......::::   :|......:::||   
  Rat   152 ----LDLKVSSKVDASLSEVLELVLENFVYPWYRDVTDDESFVDELRITLRFFASVLVRRIH--- 209

  Fly   192 LRMDAAKIIAVDMVNRVTVHLEKIRIAEARAAETNTPPVFSTNSY-------LADEEKEMEFLRK 249
             ::|...||...::.....|:|.|..|..:...|......:...|       |.....|:::|||
  Rat   210 -KVDIPSIITKKLLKAAMKHIEVIVKARQKVKNTEYLQQAALEEYGPDLHVALRSRRDELQYLRK 273

  Fly   250 LCEIMVILLLPRGYSLPP-------LKVLLSEILSYKIFFPMIKMLTAPDYINQKVVQNIETRLA 307
            |.|    ||.|  |.|||       |.:|:.||||..:|.|.:..|..||.:|..::..|:.   
  Rat   274 LTE----LLFP--YILPPKATDCRSLTLLIREILSGSVFLPSLDFLADPDTVNHLLIIFIDD--- 329

  Fly   308 AAAMSKRSYEYAASFEDFLKIINNSGNLEELSLIRKSIVNDLMHATTMQNLQRAKGLDPDHEDHS 372
              :..:::.|.|:....||:                                  |..:|.::..|
  Rat   330 --SPPEKATEPASPLVPFLQ----------------------------------KFAEPRNKKPS 358

  Fly   373 LSKSELTAAVRLKRYVRQLTMAKGECEKNLAKFGWNGNYSSDIDLTLVEILNTAVGRRYFTLFLE 437
            :.|.||       :.:|:                     ..|:   |...:|          ||:
  Rat   359 VLKLEL-------KQIRE---------------------QQDL---LFRFMN----------FLK 382

  Fly   438 PLKASALIGFYLAVEEIKHAHKSASHQLGTEIFYTYIRVPKSEIQIDK----HE--RKLIETFLL 496
            ...|..::.|.|.|||...                  |:.:.|:..|:    ||  :|:.:|:.|
  Rat   383 QEGAVHVLQFCLTVEEFND------------------RILRPELSNDEMLSLHEELQKIYKTYCL 429

  Fly   497 GDA------EPDIFYDIQR-----------------------NVLRTLEEKYYPPFVLSDQY-RQ 531
            .::      :|.|..:|||                       :||..||..:.|.|..||:| ||
  Rat   430 DESIDKIRFDPFIVEEIQRIAEGPYIDVVKLQTMRCLFEAYEHVLSLLENVFTPMFCHSDEYFRQ 494

  Fly   532 LKEALDSNEIADPTLLMCHTIGDVQEPLAD----EQPGAADGLNGGAGGAIDVAAHTSYARRKLE 592
            |....:|     ||.......|.:.  |.|    ::.|.:.|::                     
  Rat   495 LLRGAES-----PTRNSKFNRGSLS--LDDFRSTQKRGESFGIS--------------------- 531

  Fly   593 QIQERIDKKNQALDALKYSVKPESKVLT---ILEKEMEWLK------SEKRQTEAHLRRTDAWTE 648
                ||..|   :..:..|...|..||.   :.|.|.::::      .:....||  ..|.....
  Rat   532 ----RIGSK---IKGVFKSTTMEGAVLPSYGVAEGEDDFIEEGIVVLEDDSPVEA--VSTPNTPR 587

  Fly   649 HLGKWKATIQSVEV-----SDEKESLQFMILVHVDEDINAPVQPTSSKNGDSGHANLRKRPSGIS 708
            :|..||.:|..|:.     |:.||..:.:.:..:|.:                 .|.|:......
  Rat   588 NLAAWKISIPYVDFFEDPSSERKEKKERIPVFCIDVE-----------------RNDRRAVGHEP 635

  Fly   709 SGWVVMRSLNQVHELQRKLRHVSSNLKAIDLPT-------NFKFFFLKTDRHGQEKAKSQIQKFL 766
            ..|.|.|...:.:.|:.||...........||:       |::  |||:.|       .:.|::|
  Rat   636 EHWSVYRRYLEFYVLESKLTEFHGTFPDAQLPSKRIIGPKNYE--FLKSKR-------EEFQEYL 691

  Fly   767 NFILEDDHLNGSEAIYTFLSPS---SDHLKQSLPSPKKSKFSLSTLFRSDAGK-AHEASKATDPF 827
            ..:::...|:.|:.:..||||:   :..|.:.||.     .:|..:.:|..|| ..|..:..:||
  Rat   692 QKLVQHPELSNSQLLADFLSPNGGETQFLDKILPD-----VNLGKIIKSVPGKLMKEKGQHLEPF 751

  Fly   828 WGLQRDDEDISTYLDGESGGEAKMLAADLDSKDSIAEPMYALMGEIF------------------ 874
                     |.::::.....:.|....:|......:|....|..::|                  
  Rat   752 ---------IMSFINSCESPKPKPSRPELTILSPTSENNKKLFNDLFKNNANRAENTERKQNQNY 807

  Fly   875 -----DMGGVF--------------KWLRKSLISFVQITYGRTI----NRQIRESVAYLFEESML 916
                 .:.||:              .||...|:. .:|.:..|:    :..::..:..||:|..|
  Rat   808 FMEVMTVDGVYDYLMYVGRVVFQVPDWLHHLLMG-TRILFKNTLEMYTDYYLQCKLEQLFQEHRL 871

  Fly   917 HNYFSAILKSFWPGGVLASAYPTRSEDMREMTTTAAKALLTDHIPEVLCNLVGAQAAKRGVLKVF 981
            .:..:.:..:.:    ..:..|...:|.::......:.:: ::||:::...:|.:.....:..:|
  Rat   872 VSLITLLRDAIF----CENTEPRSLQDKQKGAKQTFEEMM-NYIPDLIVKCIGEETKYESIRLLF 931

  Fly   982 DALQNPAYNKQLFYELLEILMIEFFPEIRQLR 1013
            |.||.|..||||.|.||:|::.|.|||:.:::
  Rat   932 DGLQQPVLNKQLTYVLLDIVIQELFPELNKMQ 963

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snzNP_001284993.1 PXA 142..299 CDD:280373 48/173 (28%)
RGS_SNX25 422..531 CDD:188675 31/144 (22%)
PX_SNX25 645..788 CDD:132788 31/154 (20%)
Nexin_C 882..987 CDD:285792 18/108 (17%)
Snx14XP_038937462.1 PXA 157..326 CDD:396666 48/178 (27%)
RGS_SNX14 367..493 CDD:188677 34/177 (19%)
PX_SNX14 591..713 CDD:132787 30/147 (20%)
Nexin_C 834..938 CDD:400794 18/109 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2101
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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