DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment snz and Kif16b

DIOPT Version :9

Sequence 1:NP_001284993.1 Gene:snz / 31704 FlyBaseID:FBgn0029976 Length:1117 Species:Drosophila melanogaster
Sequence 2:XP_038960967.1 Gene:Kif16b / 311478 RGDID:1310146 Length:1876 Species:Rattus norvegicus


Alignment Length:1085 Identity:189/1085 - (17%)
Similarity:344/1085 - (31%) Gaps:389/1085 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   119 SNIFDLPKPIKNPSNLPLIFGKTVDLQLQQIIEYVLRDFMLPWLGYVVTKPKLINDVVREDLWNA 183
            |.:.||.:...|    ||:..|      |..:.|  ||.:|.||             :::.|.. 
  Rat   290 SALADLSQDAAN----PLVKKK------QVFVPY--RDSVLTWL-------------LKDSLGG- 328

  Fly   184 IQKIHERALRMDAAKIIAVDMVNRVTVH----LEKIRIAEARAAETNTPPVFSTNSYLADEEKEM 244
                        .:|.|.:..::...|:    |..:|.|.......|.|.:        :|:..:
  Rat   329 ------------NSKTIMIATISPADVNYGETLSTLRYANRAKNIINKPTI--------NEDANV 373

  Fly   245 EFLRKL-CEIMVILLLPRGYSLPPLKVLLSEILSYKIFFPMIKMLTAPDYINQKVVQNIETRLAA 308
            :.:|:| .||            ..||.||::       ...|.:|.:|               .|
  Rat   374 KLIRELRAEI------------ARLKTLLAQ-------GNQIALLDSP---------------TA 404

  Fly   309 AAMSKRSYEYAASFEDFLKIINNSGN-----LEELSL-IRKSIVNDLMHATTMQNLQRAKGLDPD 367
            .:|.::.::..|..::..|...|..|     |:|.:| :||..:..::.:    .|....|:|  
  Rat   405 LSMEEKLHQNEARVQELTKEWTNKWNETQNILKEQTLALRKEGIGVVLDS----ELPHLIGID-- 463

  Fly   368 HEDHSLSKSELTAAVRLKRYVRQLTMAKGECEKNLAKFGWNGNYSSDIDLTLVE-ILNTAVGRRY 431
              |..||...:  ...||.....:.......|:::...|        :||.... :...|.|   
  Rat   464 --DDLLSTGII--LYHLKEGQTYVGREDASTEQDIVLHG--------LDLESEHCVFENAGG--- 513

  Fly   432 FTLFLEPLKASALIGFYLAVEEIKHAHKSASHQLGTEIFYTYIRVPKSEIQI-DKHERKLIETFL 495
             |:.|.||..|......:.:.:....::.|...||....:.: ..||...:: :|.:..|:.:|.
  Rat   514 -TVTLIPLSGSQCSVNGVQIVDATQLNQGAVILLGRTNMFRF-NHPKEAAKLREKRKSGLLSSFS 576

  Fly   496 LGDAE---------------PDI------------FYDIQRNVLRTLEEKYYPPFVLSDQYRQLK 533
            |...:               |.:            |...||..|..||.|           |:|.
  Rat   577 LSMTDLSKSCENLSAVMLYNPGLFPMKGPICLRLEFERQQREELEKLESK-----------RKLI 630

  Fly   534 EALDSNEIADPTLLMCHTIGDVQEPLADEQPGAADGLNGGAGGAIDVAAHTSYARRKLEQIQERI 598
            |.::..:.:|...|         |.:..|                     ....|::.|.:|.:|
  Rat   631 EEMEEKQKSDKAEL---------ERMQQE---------------------VETRRKETEIVQRQI 665

  Fly   599 DKKNQALDALKYSVKPESKVLTILE----------KEMEWLKSEKRQTE-------AHLRRTDAW 646
            .|:.::|....:.:  |:|:..:|.          :|.:.|:.:|||.|       ..|||....
  Rat   666 RKQEESLKRRSFHI--ENKLKDLLAEKERFEEERLREQQGLEQQKRQEEDSFFRIREELRRLQEL 728

  Fly   647 TEHLGKWKATIQSVEVSDEKESLQFMILVHVDEDINAPVQPTSSKNGDSGHANLRKRPSGISSGW 711
            ..|           |.:::.:.||.:..:|.::|            ..|....|.||        
  Rat   729 NSH-----------EQAEKGQPLQDLDWLHREQD------------AQSAKLQLEKR-------- 762

  Fly   712 VVMRSLNQVHELQRKLRHVSSNLKAIDLPTNFKFFFLKTD----------RHGQEKAKSQIQKFL 766
               |...|..|...::.|:...|:.            :.|          :..||: :.:::...
  Rat   763 ---RLEEQEKEQVLRVAHLEEQLRK------------RQDTAPLLCPGEAQQAQEE-RRELEGIR 811

  Fly   767 NFILEDDHLN-GSEAIYTFLSPSSDHLKQSLPSPKKSKFSLSTLFRSDAGKAHEASKATDPFWGL 830
            ..:|:...:. |.:  :||........:..|...::....|:||.:....:....||..      
  Rat   812 GALLQAKEIRAGGD--HTFRGELERAQQYFLEFKRRQLVKLATLEKDLVQQKDRLSKEV------ 868

  Fly   831 QRDDEDISTYLDGESGGEAKMLAAD--------------------LDSK-----DSIAEPMYALM 870
             :::::...::..|:|.|..:||.|                    |.||     |.:...:.||:
  Rat   869 -QEEKEALEHVKCEAGEEPSLLATDNCNILCGPQDLDKIKTAESRLQSKEHQLQDLLQNHLPALL 932

  Fly   871 G------EIFDMG-----GVFKWLRK----------------SLISFVQITYGRTIN-------- 900
            .      ||.|.|     .:...:.|                |.:..:|.|...|.|        
  Rat   933 EEKQRVLEILDCGVLGLDNILYHVEKEMEEKEEQITQYQANASQLQQLQATVQFTANVARQEEKV 997

  Fly   901 ----RQIRESVAYLFEESM------LHNYFSAILK--------------------SFWPG----- 930
                ::|.||......|::      |....||:.:                    |.|||     
  Rat   998 RRKEKEILESQEKQQREALEQAVAKLEQRHSALKRRSTLDLEIQEQRQKLGSLHSSEWPGLQASL 1062

  Fly   931 ---GVLASAYPTRSE-DMREMTTTAAKALLTDHIPEVLCNLVGAQAAKRGVLKVFDALQN--PAY 989
               |......|.|.| ::.|             :.:.:|.:.|.|....|.|:...||.:  |:.
  Rat  1063 EANGERLQMDPARIEHEIHE-------------LKQKICEVDGVQRPHHGTLEGKAALSSLPPSA 1114

  Fly   990 NKQLFYELLEILMIEFFPEIRQLRVSNSNGTKLNTATAGAAAASA 1034
            .......|::..:..:..|..|.|:.:     |:...:.|:.|.|
  Rat  1115 ENSHLAPLMDARISAYIEEEVQRRLHD-----LHRVISDASHAPA 1154

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snzNP_001284993.1 PXA 142..299 CDD:280373 28/161 (17%)
RGS_SNX25 422..531 CDD:188675 24/136 (18%)
PX_SNX25 645..788 CDD:132788 22/153 (14%)
Nexin_C 882..987 CDD:285792 29/169 (17%)
Kif16bXP_038960967.1 KISc_KIF1A_KIF1B 15..368 CDD:276816 23/123 (19%)
Kinesin_assoc 367..479 CDD:406567 31/163 (19%)
FHA 481..546 CDD:395400 12/76 (16%)
DUF5401 <609..>889 CDD:375164 63/378 (17%)
sbcc <611..>1179 CDD:129705 114/661 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2101
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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