DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment snz and snx12

DIOPT Version :9

Sequence 1:NP_001284993.1 Gene:snz / 31704 FlyBaseID:FBgn0029976 Length:1117 Species:Drosophila melanogaster
Sequence 2:NP_587991.1 Gene:snx12 / 2538748 PomBaseID:SPCC16A11.04 Length:1010 Species:Schizosaccharomyces pombe


Alignment Length:1118 Identity:202/1118 - (18%)
Similarity:423/1118 - (37%) Gaps:304/1118 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 IWYYPTFFLFFAFVVYSLVLVFAAVAGTVYIHYIFTTNEPTPPSRVPSRLLYNATKSNIFDLPKP 127
            |:|:.|..:|..:::        |.:..|.|.|::.:          ..||:...::..|:    
pombe     6 IFYFITGGIFILWIL--------AHSFFVKIIYLWAS----------GCLLWYCLETRTFE---- 48

  Fly   128 IKNPSNL---------PLIFGK---------------------TVDLQLQQIIEYVLRDFMLPWL 162
              |.:||         |.||.|                     .:..:::.||.:.::.::..|.
pombe    49 --NKNNLGTSEPFLVNPAIFQKRARQLALSKLLLRQPLYPGIPEISEEIESIISHFMQKYIKVWS 111

  Fly   163 GYVVTKPKLINDV---VREDLWNAIQKIHERALRMDAAKIIAVDMVNRVTVHLEKIRIAEARAAE 224
            ..::.:|.:.|.:   :|:.|...:.::.|    :|.|.::...::..:|.|| ::.:...:...
pombe   112 YQIIPEPTISNSIESHLRKCLMVLLSRVDE----IDLADVLVKTVLPLITKHL-RLFVEAEQLVV 171

  Fly   225 TNTPPVFSTNSYLADE---------------------EKEMEFLRKLCEIMVILLLPRGYSLPPL 268
            .|....|:.:|.|:.|                     ..:..:||.....::.::||..|...||
pombe   172 GNKAVSFTDHSELSREVAAKYDHGRLHEAVLLSGNPMVAQKRYLRNWTTQVLSIILPNYYETSPL 236

  Fly   269 KV-LLSEILSYKIFFPMIKMLTAPDYINQKVVQ--------NIETRLAAAAMSKRSYEYAA---- 320
            .: |::|::......|::..::.||:.|..::|        ..:.|....|:.|:|..:..    
pombe   237 VLSLVTEVIINTTLLPLVSYISDPDFFNYLIIQASGSIIQRRRKIRRLKRAIRKQSNHFQVGARR 301

  Fly   321 --------SFEDFLKIINNSGNLEELSLIRKSIVNDLMHATTMQNLQRAKGLDPDHEDHSLSKSE 377
                    |||.::..|....|:.:...:|..::      ...:.|::.:..|            
pombe   302 LRLKDSQHSFEQYIHEIKKISNISDARRLRSELM------VQRRQLEQTEAFD------------ 348

  Fly   378 LTAAVRLKRYVRQLTMAKGECEKNLAKFGWNGNYSSDIDL-----TLVEILNTAVGRRYFTLFLE 437
                ...|:|..:|.:|....||.::..........:..|     :|::||:.:.....|..|:|
pombe   349 ----FEFKQYRERLQIAIITAEKRISLLSGTPFQHKEAVLFEQVQSLLQILSDSAAVSCFLEFME 409

  Fly   438 PLKASALIGFYLAVEEIK-------HAHKSA-------SHQLGTEIFYTYIRVPKSEIQIDKHER 488
            ....|..:.|:|.||.:|       :||..|       .|...|.|..:|.....:.:.|.|...
pombe   410 RKNRSRYLHFWLVVEGLKESQDDPLNAHMIAPFSDIVSDHTDFTAIVKSYFESVDNPLDIPKPLT 474

  Fly   489 KLIETFL---LGDAEPDIFYD-------IQRNVLRTLEEKYYPPFVLSD-QYRQLKEALDSNEIA 542
            ..|..|:   ..:..||::.:       .|.:|...::...|..||.|: .||.|.:.:.|:..:
pombe   475 NTINKFVNQSKDNLNPDLWVEARNAMLMAQEHVFDIMQNSDYSEFVNSEIYYRFLAQDVVSDHKS 539

  Fly   543 DPTLLMCHTIGDVQE--PLADEQP------GAADGLNGGAGGAIDVAAHTSYARRK------LE- 592
            ..:......:.::.|  |...:||      .::..:|.....:|.::..:|.:|.|      || 
pombe   540 TNSSATFSRLEELGENIPAISKQPSYLSISSSSKSINSSPSPSIQLSVSSSISRDKNLSPLDLEL 604

  Fly   593 -------------------QIQERIDKKNQALDALKYSVKPESKVLTILEK-----EMEWLKS-- 631
                               |:.|.||:.|..::.||..:   :.:.|:::|     :.:.|||  
pombe   605 DDPTYSDEEEVLFAPPGDLQLSESIDELNNNIEELKAQL---NAINTLIKKAELVADQKQLKSLT 666

  Fly   632 ------------EKRQTEAHLRRTDAWTEHLGKWKATIQSVEVSDEKESLQFMILVHVDEDINAP 684
                        ::||.:.::.:.:. ::...:.:.:|.|.::|.|:.:..|.:.....|.:   
pombe   667 KNHQEIEKAIHRKERQRDQYMSQEED-SKLFNRSRVSIDSFKISKEENTPDFAVYTIRIERL--- 727

  Fly   685 VQPTSSKNGDSGHANLRKRPSGISSGWVVMRSLNQVHELQRKLRHVSSNLKAIDLPTNFKFFFLK 749
                     ::||         :.|||:|.|...:..||.::|:.....::::..|.  |.....
pombe   728 ---------ENGH---------VRSGWMVARRYREFAELHKQLKQTYPGVRSLKFPQ--KSIITS 772

  Fly   750 TDRHGQEKAKSQIQKFLNFILEDDHLNGSEAIYTFLSPSSDHLKQSLPSPKKSKFSLSTLFR-SD 813
            .:::..|..:..::::|..:.....:..|:.:..|||      :|::.:|:        :|. .:
pombe   773 LNKNVLEYRRGALEEYLQSLFRMPEVCDSKMLRMFLS------QQNITAPQ--------MFNPKE 823

  Fly   814 AGKAHEASKATDPFWGLQRDDEDISTYLDGESGGEAKMLAADLDSKDSIAEPMYALMGEIFDMGG 878
            .||.          |      :.:...|..|......  |:::::..|.:.|:...:.|:|....
pombe   824 VGKK----------W------KQLLEVLGFEVNNSFN--ASNVNTNSSFSGPISEFLVELFSPND 870

  Fly   879 VFK--WL-RKSLISFVQITYGRTINRQIRESVAYLFEESMLHNYFSAILKSFWPGGVLASAYPTR 940
            ..|  || :|:.||.::..:|..:.::||..:..||....::..    |:.| ..|:...:....
pombe   871 DAKQQWLPKKTYISILEQLFGGALEKRIRLQLFQLFTPEKIYRK----LREF-RRGLEGKSNHDH 930

  Fly   941 SEDMREMTTTAAKALLTDHIPEVLCNLVGAQAAKRGVL---------------KVFDALQNPAYN 990
            |:|.|.  :.|.|....|.      |.:.|:|   |:|               ::|..|||.:.|
pombe   931 SKDRRH--SRARKPAYADR------NQLKAEA---GILLASMFPGYTPDIAVKRIFRILQNQSLN 984

  Fly   991 KQLFYELL-EILM 1002
            ..:.|.|| |||:
pombe   985 AHVIYTLLDEILL 997

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snzNP_001284993.1 PXA 142..299 CDD:280373 31/181 (17%)
RGS_SNX25 422..531 CDD:188675 31/133 (23%)
PX_SNX25 645..788 CDD:132788 24/142 (17%)
Nexin_C 882..987 CDD:285792 27/120 (23%)
snx12NP_587991.1 PXA 101..268 CDD:280373 29/171 (17%)
RGS 395..527 CDD:295367 29/131 (22%)
PX_MDM1p 680..810 CDD:132786 26/159 (16%)
Nexin_C 883..981 CDD:285792 24/113 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2101
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 81 1.000 Inparanoid score I1842
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0006633
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_106742
Panther 1 1.100 - - LDO PTHR22775
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1370
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
87.850

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