DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment snz and snx-14

DIOPT Version :9

Sequence 1:NP_001284993.1 Gene:snz / 31704 FlyBaseID:FBgn0029976 Length:1117 Species:Drosophila melanogaster
Sequence 2:NP_496844.3 Gene:snx-14 / 174997 WormBaseID:WBGene00013011 Length:971 Species:Caenorhabditis elegans


Alignment Length:1139 Identity:216/1139 - (18%)
Similarity:392/1139 - (34%) Gaps:377/1139 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 GITLTLLAVIWYYPTFFLFFAFVVYSLVLVFAAVAGTVYIHYIFTTNEPTPPSRVPSRLLY---- 114
            |..:.||..|:|...    |.||.. ||::.:.:||.::..::|..:.        ..:||    
 Worm    18 GAAVVLLTAIFYAAD----FGFVSI-LVVIGSLLAGILFAKWVFECSN--------GEMLYQWKD 69

  Fly   115 ----NATKSN---------------IFDLPKPIKNP---SNLPLIFGKTVDLQLQQIIEYVLRDF 157
                :||.|:               ..|..|..:.|   .:||....:.|:..|.:|:|    .:
 Worm    70 YFNPSATTSSRKPEAEEADDDDDDARLDSEKTRRMPWQGLSLPASLNEAVENLLNEIVE----QY 130

  Fly   158 MLPWLGYVVTKPKLINDVVREDLWNAIQKIHERALRMDAAKIIAVDMVNRVTVHLEKIRIAEARA 222
            :..|.|..:::.:...:.:|..|..|...:.....|:|.|:.::...:...:.::.:|...|.:.
 Worm   131 VNGWYGGAISRDRAFINEIRYQLRYASANLIRCIRRVDLAEFVSDQALPIASFYITRINELEQKL 195

  Fly   223 AETNTPPVFSTNSYLADE-----------EKEMEFLRKLCEIMV-------------------IL 257
            .|:.|||.....:.:|::           ::|..::|::.:.::                   :.
 Worm   196 RESPTPPRSLLETKIAEQLDDIHVALSGRDEETAYVRQISDFLIPRLLDETRLAGRAHDDDSPLR 260

  Fly   258 LLPRGYSLPP-----LKVLLSEILSYKIFFPMIKMLTAPDYINQKVVQNIETRLAAAAMSKRSYE 317
            |..||.:..|     ::..|.|:|:..:..|:..|||.||.||                    |.
 Worm   261 LFGRGKNERPWPSKSVRGFLREMLTNAVLLPVFDMLTQPDTIN--------------------YW 305

  Fly   318 YAASFEDFLKIINNSGNLEELSLIRKSIVNDLMHATTMQNLQRAKGLDPDHEDHSLSKSELTAAV 382
            ....|::..|:               .::.:.:..|.:..|   |||    .|.|.:...|.   
 Worm   306 LILLFDEHRKV---------------EMIEEHVDTTPIPLL---KGL----TDESGASDNLP--- 345

  Fly   383 RLKRYVRQLTMAKGECEKNLAKFGWNGNYSSDIDLTLVEILNTAVGRRYFTLFLEPLKASALIGF 447
                                         .|.:.|.|.|||..|.....|.::|:.::...    
 Worm   346 -----------------------------DSLLQLKLTEILRDARLYAIFRMYLQDIRGPV---- 377

  Fly   448 YLAVEEIKHAHKSASHQLGTEIFYTYIRVPKSEIQIDKHERKLIETFLLGDAEPDIFYDIQR--- 509
                           |:|...:..|.|        :|..:|||       :::..|.|||.:   
 Worm   378 ---------------HELQFLVEATRI--------LDSIQRKL-------ESDSQIAYDIWQLYG 412

  Fly   510 -----------NVLRTLEEKYYPPFVLSD----------QYRQLKEALDSNEI---ADPTLLMCH 550
                       .:..:|.|:|.....::|          .|:::.....|..:   ......:.|
 Worm   413 QFVHESAQERVRIAESLVEQYKSAVEVNDIRVLEGIIEMSYQEVYNRTQSTHVVAFCQSECFLGH 477

  Fly   551 TIGD----VQEPLADEQPGAADGLNGGAGGAIDVAAHTSYARRKLEQIQERIDKKNQALDALKYS 611
            ..|.    :.| |.|:|             |...||........|.|::.|:.|   ||.::...
 Worm   478 LCGSPPITINE-LIDQQ-------------ARQRAAAPVERTFSLSQLRARVRK---ALTSVSDE 525

  Fly   612 VKPESKVLT----------------------ILEKEMEWLKSEKRQTEAHLRRTDAWT------E 648
            .|.|:.|.|                      ::| ::|..:||..: ||.:.:|....      .
 Worm   526 EKEEAGVETPESQGGSSTASSYVNIAAPSIDVIE-DVEEERSEPAE-EAPIPKTTGLVIDSEPPI 588

  Fly   649 HLGKWKATIQSV-----EVSDEKESLQFMILVHVDEDINAPVQPTSSKNGDSGHANLRKRPSGIS 708
            :|..||..:..|     ::||.   :.|:.::.|:.....|            |...|       
 Worm   589 NLNCWKVNVAQVNGLRDKISDR---VIFVFIIEVERPDAKP------------HETQR------- 631

  Fly   709 SGWVVMRSLNQVHELQRKLRHV-SSNLKAIDLPTNFKFFFLKTDRHGQEKAKSQIQKFLNFILED 772
              |.:.||.|:.:.|:.||... ..:|:...|||  :..|:..|:...|:.:.....||:.:.:.
 Worm   632 --WSIHRSFNEFYVLESKLNEFHGDSLRFSPLPT--RKTFVTRDKPFMEQHRLIFSTFLSTLSKQ 692

  Fly   773 DHLNGSEAIYTFLSPSSDHLKQSLPSPKKSKFSLSTLFRSDAGKAHEASKATDPFWGLQRD-DED 836
            ..||.||.:..||| |::..:.:|        ||..|      ...:..|.|.|...:.|: .::
 Worm   693 RILNRSELLLAFLS-SNEEFRDTL--------SLGDL------NPWKVVKKTLPGKLVNREKGQN 742

  Fly   837 ISTYLDGESGGEAKMLAADLDSKDSIAEP----------MYAL---------MGEIFDMGGVFK- 881
            :..:|       .|.||..|...|.:.:|          .|:|         .|..||  |||| 
 Worm   743 LKPFL-------LKTLAQTLVPPDRVKKPSENGLEDATTSYSLATNAVYSSVYGNNFD--GVFKE 798

  Fly   882 ------------WLRKS---------------------LISFVQITYGRTINRQIRESVAYLFEE 913
                        |.|.:                     :.|.::....:||:..|...:..:|.:
 Worm   799 SCRSLGDEDMRLWTRSAYDSILLLFWQPLKTQFQWALPIFSAIRALCSKTIDSMICSVLGGVFRK 863

  Fly   914 SM-LHNYFSAILKSFWPGGVLASAYPTRSE-DMR-EMTTTAAKALLTDHIPEVLCNLVGAQAAKR 975
            .: :.|....:....|......:.:||..| .|| |:..........::||:....|:|....|.
 Worm   864 CLSVANLTYLVQHIQWSLFCNDAPWPTEQEMKMREELALRITLEFFQNNIPQHARRLIGRDDIKT 928

  Fly   976 GVLKVFDALQNPAYNKQLFYELLEILMIEFFPEI 1009
            .:.::.|.||.|..||||.|.|::.|:::.|||:
 Worm   929 LISRIIDVLQYPRLNKQLLYVLVDRLLLQIFPEL 962

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snzNP_001284993.1 PXA 142..299 CDD:280373 36/191 (19%)
RGS_SNX25 422..531 CDD:188675 22/132 (17%)
PX_SNX25 645..788 CDD:132788 34/154 (22%)
Nexin_C 882..987 CDD:285792 23/128 (18%)
snx-14NP_496844.3 PXA 112..314 CDD:383027 39/225 (17%)
RGS 352..475 CDD:214613 25/156 (16%)
PX_SNX14 591..708 CDD:132787 33/143 (23%)
Nexin_C 856..941 CDD:370015 17/84 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1370
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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