DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment snz and snx13

DIOPT Version :9

Sequence 1:NP_001284993.1 Gene:snz / 31704 FlyBaseID:FBgn0029976 Length:1117 Species:Drosophila melanogaster
Sequence 2:XP_002933347.2 Gene:snx13 / 100495358 XenbaseID:XB-GENE-6037458 Length:975 Species:Xenopus tropicalis


Alignment Length:1083 Identity:249/1083 - (22%)
Similarity:429/1083 - (39%) Gaps:235/1083 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 IEPEPSVTATQRLTLLATRLLRALQLNWRIIVSGITLTLLA----VIWYYPTFFLFFAFVVYSLV 81
            |..||.:....|...:...:|:|....|.....|:.|.|:.    .|:|:..:.|.|....:.:.
 Frog     2 IPKEPCLDERNRKEDVVNCILKASLSVWGWGSLGVVLFLIKFGPFAIFYFAFYILCFVGGGFVVT 66

  Fly    82 LVFAAVAGTVYIHYIFTTNEPTPPSRVPSRLLYNATKSNIFDLPKPIKNPSNLPLIFGKT-VDLQ 145
            ::|...:...|:.....:..|:..:.:|..|      ..|...|:.||....   |.|.: :|..
 Frog    67 ILFGKTSSERYLERCEHSFLPSTSTGIPKCL------EEIKREPRTIKIDRR---ITGASMIDEP 122

  Fly   146 LQQIIEYVLRDFMLPWLGYVVTKPKLINDVVREDLWNAIQKIHERALRMDAAKIIAVDMVNRVTV 210
            |||:|::.|||::..|. |.:::.:.....:|:.:.||:.:...|:..:|........:|:....
 Frog   123 LQQVIQFSLRDYVQYWY-YTLSEDESFLLEIRQTVQNALVQFSTRSKEIDWQPYFTTRLVDDFAT 186

  Fly   211 HLEKIRIAEARAAETNTPPVFSTNSYL---ADEEKEME-----------------FLRKLCEIMV 255
            ||...|.|:.:.||...........::   .:.|.|||                 .|:.|||:::
 Frog   187 HLRVFRKAQQKMAEKEDQKKDKAEDFIDTFFEVEVEMEKCVCRDLVCTSSKDEEGCLKDLCEVLL 251

  Fly   256 ILLLPRG-YSLPPLKVLLSEILSYKIFFPMIKMLTAPDYINQKVVQNIETRLAAAAMSKRSYEYA 319
            .||||.| :....::..:.||||..|..|:|..|:.||||||.::..|             ::::
 Frog   252 YLLLPPGDFQNKIMRYFVREILSRGILLPLINQLSDPDYINQYIIWMI-------------HDFS 303

  Fly   320 ASFEDFLKIINNSGNLEELSLIRKSIVNDLMHATTMQNLQRAKGLDPDHEDHSLSKSELTAAVRL 384
            .::|.|:.:|..|||:.||..:|..         ..:.||..:.||...:|.:..|:::.:.:.:
 Frog   304 CNYEAFMNVIKLSGNISELEAVRDK---------AAEELQYLRSLDTVGDDINTIKNQINSLLFV 359

  Fly   385 KRYVRQLTMAKGECEKNLAKFGWNGNYSSDIDLTLVEILNTAVGRRYFTLFLEPLKASALIGFYL 449
            |: |.:..:.:.:..|.:.......|:.....:.|.:||...|..::|..|::.....|.:.|:|
 Frog   360 KK-VCETRIQRLQSGKEIDTVKLAANFGKLCTVPLDKILVDNVALQFFMDFMQQTGGQAHLFFWL 423

  Fly   450 AVE----------EIKHA-HKSASHQLGTE----------IFYTYIRVPKS-EIQIDKH-ERKLI 491
            .||          |:.|: .:...||....          ::..|:....| .:.||.: ..||.
 Frog   424 TVEGYRVTAQQQLEVLHSRQRDGKHQTNQTKGLLKAAAFGVYEQYLSEKASPRVHIDDYLLAKLE 488

  Fly   492 ETFLLGDAEPDIFYDIQRNV--LRTLEEKYYPPFVLSDQYRQLKEALDSNEIADPTLLMCHTIGD 554
            |.....|..|:||.||||.|  :....|::||.|..:..|.::...||.                
 Frog   489 EKLNSEDPTPEIFDDIQRKVYDMMLRNERFYPSFRQNTLYIRMLAELDM---------------- 537

  Fly   555 VQEP-LADEQPGAADGLNGGAGGAIDVAAHTSYARRKLEQIQERIDKKNQALDALKYSVKPESKV 618
            ::|| ......|..:..||...|:|    |:|                   ||.|..|       
 Frog   538 LKEPSFKGSDDGDGESFNGSPNGSI----HSS-------------------LDDLTSS------- 572

  Fly   619 LTILEKEMEWLKSEKRQTEAHLRRTDAWTEHLGKWKATIQSVEVSDEKESLQFMILVHVDEDINA 683
                        .|..|..|.:..|....|| ||   |.....::.::.:|..|      ||:  
 Frog   573 ------------DELLQINAFISDTGVCNEH-GK---TYALYAITVQRRALDSM------EDM-- 613

  Fly   684 PVQPTSSKNGDSGHANLRKRPSGISSGWVVMRSLNQVHELQRKLRHVSSNLKA-IDLPTNFKFFF 747
                                       |...|..:..|:...::.....||.: :.||.  |..|
 Frog   614 ---------------------------WKTYRRYSDFHDFHMRITEQFENLASLLKLPG--KKTF 649

  Fly   748 LKTDRHGQEKAKSQIQKFLNFILEDDHLNGSEAI--YTFLSPSSDHLKQSLPSPKKSKFS----- 805
            ...|:...||.::.:..:|..:|..:.:..|.|:  |.|     |.|:....|..|..|:     
 Frog   650 NNMDKEFLEKRRNDLNAYLQLLLNPEIVKASPALAHYVF-----DFLENKAYSKGKGDFARKMDT 709

  Fly   806 ----LSTLFR--SDAGKAHEASKATDPFWGLQRDDEDISTYLDGESGGEAK-------------- 850
                |....|  |:|.|:...|.|.    |:.:..:::.. :..:.|.:.|              
 Frog   710 FVNPLRNSMRNVSNAVKSIPDSLAE----GMNKMSDNMGK-MSEKIGQDIKHSFFKAPILVPKTD 769

  Fly   851 ------MLAADLDSK--DSI-AEPMYALMGEIFDMGGVFKWLRKSLISFVQ----ITYGRTINRQ 902
                  .::|.||..  |:| ...|..||.|:||:....:|||:.:.|.:|    .|||.||||:
 Frog   770 AFPENYRVSAQLDDNVDDNIPLRVMLLLMDEVFDLKERNQWLRRQITSLLQQLIRATYGDTINRK 834

  Fly   903 IRESVAYLFEESMLHNYFSAILKSFWPGGVLASAYPTRSEDMREMTTTAAKALLTDHIPEVLCNL 967
            |.:.|.|:.....:.:|.....:||||.|:||.|...|...:|..|..|||..|.:.:|:.|.::
 Frog   835 IVDHVQYMTSPDQVADYVKQFRESFWPNGILAEASLRRDRSIRMRTRVAAKTKLLEIMPDELKHI 899

  Fly   968 VGAQAAKRGVLKVFDALQNPAYNKQLFYELLEILMIEFFPEIR 1010
            :||:..::|:|:||:..|....|::|.|..||..:...||:.:
 Frog   900 IGAETTRKGILRVFEMFQYNQLNRRLVYVFLEGFLETLFPQYK 942

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snzNP_001284993.1 PXA 142..299 CDD:280373 49/177 (28%)
RGS_SNX25 422..531 CDD:188675 35/133 (26%)
PX_SNX25 645..788 CDD:132788 27/145 (19%)
Nexin_C 882..987 CDD:285792 40/108 (37%)
snx13XP_002933347.2 PXA 119..301 CDD:383027 50/195 (26%)
RGS_SNX13 396..530 CDD:188674 35/133 (26%)
PX_SNX13 576..694 CDD:132783 32/163 (20%)
Nexin_C 810..918 CDD:370015 39/107 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D104136at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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