DRSC/TRiP Functional Genomics Resources

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Protein Alignment spidey and stdh-4

DIOPT Version :9

Sequence 1:NP_572420.1 Gene:spidey / 31703 FlyBaseID:FBgn0029975 Length:321 Species:Drosophila melanogaster
Sequence 2:NP_001355440.1 Gene:stdh-4 / 184934 WormBaseID:WBGene00006435 Length:317 Species:Caenorhabditis elegans


Alignment Length:303 Identity:111/303 - (36%)
Similarity:178/303 - (58%) Gaps:14/303 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LSLLGGLAIGIVGFQVFRKVLPWIY------ANVVGPKVFGSSVDLSKM--GEWAVVTGSTDGIG 65
            |:|...|.|.|:   |....|.::|      .|:.|..:|.:.:||.:.  ..||||||:|||||
 Worm     5 LNLDENLLIMII---VIAYTLQFLYHLIKISLNIFGVYIFYTPIDLKRTAGASWAVVTGATDGIG 66

  Fly    66 KAYAKELARRGLKLVLISRSLEKLNVVAKEIGDKYG-VEVRVIDVDFTG-GDEIYDKIREKTTGL 128
            ::||.:|||||..:.||||:..||....|:|.:||. :|||....|||. ..|.|.::......:
 Worm    67 RSYALDLARRGFNIFLISRTKSKLVKTKKQILNKYSDIEVRYAICDFTRVSYEDYKRLLHSLNEV 131

  Fly   129 NVGVLVNNVGISYGHPEYFLDCYKADPPFLRNIVAANIHSVTHMTALFLPGMISQRRGVIINVSS 193
            ::|:|:||||:.:.:|| .|...:.....|.|::..||..||.:||..||.|::::.|:|:|:.|
 Worm   132 DIGILINNVGMCFDNPE-VLHRVEGGIDTLTNVINVNILPVTLLTAGILPQMMARKSGIIVNIGS 195

  Fly   194 TAGVIPNPLLSVYSSTKAFVNKFSDDLQTEYKEHGILIQSVQPGFVATNMSKIRKASVFAPSPET 258
            .||.|.....||||:||.::..|:..||.||:..||:.|::.|..|:|||.|...:|:|.|:.::
 Worm   196 AAGSIHMAKWSVYSATKKYIEWFTSILQKEYENEGIICQTITPLLVSTNMIKNPLSSIFCPNSDS 260

  Fly   259 YVRSALSTLGIATQTAGYLPHALLQLVIHFTEAVFGEQFARNI 301
            :.:|:|:|:|.::.|.||:.|.:...:|.|...:..:.|.:|:
 Worm   261 FAKSSLNTIGNSSSTTGYITHQIQFELIKFVPEIIIDLFVKNL 303

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spideyNP_572420.1 PLN02780 8..321 CDD:166421 111/303 (37%)
17beta-HSD1_like_SDR_c 52..288 CDD:187614 95/237 (40%)
stdh-4NP_001355440.1 17beta-HSD1_like_SDR_c 53..295 CDD:187614 96/242 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160167859
Domainoid 1 1.000 148 1.000 Domainoid score I2740
eggNOG 1 0.900 - - E1_COG0300
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H95094
Inparanoid 1 1.050 201 1.000 Inparanoid score I2462
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53762
OrthoDB 1 1.010 - - D584062at33208
OrthoFinder 1 1.000 - - FOG0000465
OrthoInspector 1 1.000 - - mtm4736
orthoMCL 1 0.900 - - OOG6_100431
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X484
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.670

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