DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpr14 and Lsamp

DIOPT Version :9

Sequence 1:NP_001245573.1 Gene:dpr14 / 31702 FlyBaseID:FBgn0029974 Length:340 Species:Drosophila melanogaster
Sequence 2:XP_038944182.1 Gene:Lsamp / 29561 RGDID:71102 Length:378 Species:Rattus norvegicus


Alignment Length:205 Identity:59/205 - (28%)
Similarity:83/205 - (40%) Gaps:37/205 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 TLNISTQLSSSVYLHCRVNDLQGKTVSWMRRRGDDLTLITFGQHTYSGDSRYSLEFEEPNDWKLL 145
            |.||:.:...:..|.|.|.|...| |:|:.|.|    :|..|...:|.|.|..||.....::.|.
  Rat    55 TDNITVRQGDTAILRCVVEDKNSK-VAWLNRSG----IIFAGHDKWSLDPRVELEKRHALEYSLR 114

  Fly   146 IQFANERDEGPYECQV-SSHPPLVLLVYLTIIVPHVEILDERGSATPEKYYKAGSTIELQCVISK 209
            ||..:..|||.|.|.| :.|.|....|||.:.||     .:..:.:.:.....||.:.|.|:.:.
  Rat   115 IQKVDVYDEGSYTCSVQTQHEPKTSQVYLIVQVP-----PKISNISSDVTVNEGSNVTLVCMANG 174

  Fly   210 IPHPSSYITWRHGPRLLNYDTSRGGISVKTDMLP-GRAL----SRLYIANANRQDTGNYTCMLGN 269
            .|.|  .|||||                   :.| ||..    ..|.|....|:.:|.|.|...|
  Rat   175 RPEP--VITWRH-------------------LTPLGREFEGEEEYLEILGITREQSGKYECKAAN 218

  Fly   270 EITETVVVHV 279
            |::...|..|
  Rat   219 EVSSADVKQV 228

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr14NP_001245573.1 IG_like 83..163 CDD:214653 27/80 (34%)
Ig 84..169 CDD:299845 28/85 (33%)
IG_like 191..279 CDD:214653 23/92 (25%)
Ig 201..274 CDD:143165 20/77 (26%)
LsampXP_038944182.1 Ig 55..145 CDD:416386 33/94 (35%)
FR1 55..71 CDD:409353 4/15 (27%)
Ig strand A' 56..62 CDD:409353 2/5 (40%)
Ig strand B 64..72 CDD:409353 2/7 (29%)
CDR1 72..76 CDD:409353 2/3 (67%)
FR2 77..84 CDD:409353 3/7 (43%)
Ig strand C 77..83 CDD:409353 3/6 (50%)
CDR2 85..95 CDD:409353 3/13 (23%)
Ig strand C' 87..90 CDD:409353 1/2 (50%)
Ig strand C' 92..95 CDD:409353 0/2 (0%)
FR3 96..131 CDD:409353 13/34 (38%)
Ig strand D 100..107 CDD:409353 3/6 (50%)
Ig strand E 110..116 CDD:409353 1/5 (20%)
Ig strand F 123..131 CDD:409353 4/7 (57%)
CDR3 132..136 CDD:409353 1/3 (33%)
Ig strand G 136..145 CDD:409353 4/8 (50%)
FR4 138..145 CDD:409353 3/6 (50%)
Ig_3 148..218 CDD:404760 21/95 (22%)
Ig strand A' 155..160 CDD:409353 0/4 (0%)
Ig strand B 166..173 CDD:409353 2/6 (33%)
Ig strand C 179..184 CDD:409353 3/4 (75%)
Ig strand D 190..193 CDD:409353 1/2 (50%)
Ig strand E 197..203 CDD:409353 2/5 (40%)
Ig strand F 210..217 CDD:409353 3/6 (50%)
Ig strand G 224..232 CDD:409353 2/5 (40%)
Ig_3 235..311 CDD:404760
Ig strand B 252..256 CDD:409353
Ig strand C 265..269 CDD:409353
Ig strand E 290..294 CDD:409353
Ig strand F 304..309 CDD:409353
Ig strand G 318..321 CDD:409353
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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