DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nek2 and Herc6

DIOPT Version :9

Sequence 1:NP_572415.1 Gene:Nek2 / 31696 FlyBaseID:FBgn0029970 Length:735 Species:Drosophila melanogaster
Sequence 2:NP_080268.1 Gene:Herc6 / 67138 MGIID:1914388 Length:1003 Species:Mus musculus


Alignment Length:557 Identity:113/557 - (20%)
Similarity:171/557 - (30%) Gaps:215/557 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SGEESAGMDFSQKTLQDYEVLAVMGNGSFGTCYKVRDKST------------------------- 41
            |||..:.:.||...:..      .|:.|:|...:.||:||                         
Mouse    29 SGEHHSLLLFSNHRVYS------CGDNSWGQLGQRRDQSTERPEPIQALNDLHVDLVSCGKEHSV 87

  Fly    42 -----GELFAWKGMNYDELDEAKCDALVSEISVLRQLQHPNIVQ----YYHHLVNREAKSVYIVM 97
                 |::|||...:..:|...:...:....:.::.|....|:|    :||.|...|...|:   
Mouse    88 AVCHKGKVFAWGAGSEGQLGIGEFKEISFMPTKIKALAGIKIIQVSCGHYHSLALSEDGHVF--- 149

  Fly    98 ECCAGGDLAQ----IVQRARSQRQRFEEPYIWRVLFQLCRALQVCHNKIPNGTILHRDIKPANIF 158
               :.|..::    :.:.:|||           .:.|..::|:    .||...:           
Mouse   150 ---SWGRNSEGQLGLGKNSRSQ-----------AIPQKVKSLE----GIPLAQV----------- 185

  Fly   159 LDAAGNAKLGDFGLARMLRRDQSFAASFVGTPH----------YMSPELVKGRKYDRKSDVWAVG 213
              |||..              .|||.|..||..          .:|...||.:.|...|    :|
Mouse   186 --AAGGT--------------HSFALSLTGTSFGWGSNRSGQLALSGNKVKEQIYKPHS----IG 230

  Fly   214 CL-----VYEMCA-----------------------LRP-PFRGRAFDQLSEKIAQGEFSRIP-A 248
            .|     :|..|.                       |:| |..|:...||.|.|. |..|:|. |
Mouse   231 ALKNLSVIYISCGYEHTAVLTEEGQVFTFGGNSSGQLQPSPRSGQRGPQLIEGIG-GRVSQIECA 294

  Fly   249 IYSTDLQEIIAFMLAVDHEQRPGIEVIIRHPLVVRNISELDGKFPILVDSGEDFYTLPSGARLFE 313
            .|.|     ||::.........|     |.|....|.:..:..     ....|...|.:...|.:
Mouse   295 SYHT-----IAYVYTTGQVVSLG-----RGPSHTSNPTHQEAP-----AENSDITCLLAAEDLVD 344

  Fly   314 DEEED---GVHPELSSTMFTEQYSFNEGYGQRRLSVTGVFTPDLRSELFYSAKRKIFPAKKLQLS 375
            .|.:|   |.|....:|              ||:|.|       ||.   ....||.|       
Mouse   345 IEVKDIFAGAHANFVTT--------------RRVSHT-------RST---GVSMKILP------- 378

  Fly   376 DPSLYESIRREERAEERQVELAEERRRKKDQEQQKRDQELLKEAPSSPRALT-----------QN 429
                 |.|    |..:..|:......::||:|..||:..|:.   ||...||           .|
Mouse   379 -----EII----RINQSLVKKWRAANKRKDREGAKREISLIF---SSSACLTASFLKKRDAGENN 431

  Fly   430 IFDEVLK------TRLHAIRAQESLLQQKLEELQTRE 460
            :.|..||      .:|...:...||:...|||...|:
Mouse   432 LIDVDLKLARDVFKKLTTEKWISSLITTCLEEYLLRD 468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nek2NP_572415.1 STKc_Nek2 18..281 CDD:270857 65/340 (19%)
S_TKc 19..281 CDD:214567 65/339 (19%)
Herc6NP_080268.1 RCC1 1 40..91 7/56 (13%)
RCC1 40..89 CDD:278826 7/54 (13%)
RCC1 2 92..144 11/51 (22%)
RCC1 92..142 CDD:278826 11/49 (22%)
RCC1 145..195 CDD:278826 14/97 (14%)
RCC1 3 146..197 15/98 (15%)
RCC1_2 183..211 CDD:290274 9/54 (17%)
RCC1 4 199..252 11/56 (20%)
RCC1_2 237..266 CDD:290274 2/28 (7%)
RCC1 5 253..303 16/55 (29%)
RCC1 253..300 CDD:278826 14/52 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 261..281 5/19 (26%)
chaperonin_like <570..>652 CDD:295468
HECTc 658..999 CDD:238033
HECTc 682..999 CDD:214523
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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