DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nek2 and Rcc1l

DIOPT Version :9

Sequence 1:NP_572415.1 Gene:Nek2 / 31696 FlyBaseID:FBgn0029970 Length:735 Species:Drosophila melanogaster
Sequence 2:NP_001101802.1 Gene:Rcc1l / 360796 RGDID:1307558 Length:461 Species:Rattus norvegicus


Alignment Length:222 Identity:41/222 - (18%)
Similarity:66/222 - (29%) Gaps:98/222 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly   160 DAAGNAKLGDFGLARMLRRDQSFAASF-----VGTPHYMSPELVKGRKYDRKSDVWAVGCLVYEM 219
            :|..:|.:..:...|..|.|:.|...|     :|.|.::.|....|.:                 
  Rat    37 EAEADAPVFQYVGERAARADRVFVWGFSFSGALGVPSFVVPSSGPGPR----------------- 84

  Fly   220 CALRP-------PFR------------GRAFDQLSEKIAQGEFSRIPAIYSTDLQEIIAFMLAVD 265
            ..|||       |:|            |..|..||.|             :.|:.::....|..|
  Rat    85 AGLRPRRRIQPVPYRLELDHKISSAACGYGFTLLSSK-------------TKDVTKVWGMGLNKD 136

  Fly   266 -----HEQRP----GIEVIIR------------------------HPLVVRNISELDGKFPILVD 297
                 |..|.    |.|.::.                        |.||   :::.:|.|.:   
  Rat   137 SQLGFHRSRKDKTRGYEYVLEPSPVPLPLDRPQETKVLQVSCGRAHSLV---LTDREGVFSM--- 195

  Fly   298 SGEDFYTLPSGARLFEDE---EEDGVH 321
             |.:.:. ..|.::.|||   |...||
  Rat   196 -GNNAHG-QCGRKVVEDEVYSESHKVH 220

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nek2NP_572415.1 STKc_Nek2 18..281 CDD:270857 29/177 (16%)
S_TKc 19..281 CDD:214567 29/177 (16%)
Rcc1lNP_001101802.1 RCC1 127..186 CDD:278826 9/61 (15%)
RCC1_2 173..202 CDD:290274 6/36 (17%)
RCC1 192..242 CDD:278826 9/34 (26%)
RCC1_2 229..258 CDD:290274
RCC1 245..295 CDD:278826
RCC1 298..348 CDD:278826
RCC1_2 393..422 CDD:290274
RCC1 409..452 CDD:278826
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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