DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nek2 and Herc1

DIOPT Version :9

Sequence 1:NP_572415.1 Gene:Nek2 / 31696 FlyBaseID:FBgn0029970 Length:735 Species:Drosophila melanogaster
Sequence 2:XP_006511166.1 Gene:Herc1 / 235439 MGIID:2384589 Length:4885 Species:Mus musculus


Alignment Length:522 Identity:95/522 - (18%)
Similarity:170/522 - (32%) Gaps:151/522 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   313 EDEEEDGVH--PELSSTMFTEQYSFNEGYGQRRLSVTGVFTPDLRSELFYSAKRKIFPAKKLQLS 375
            |.||:..:.  ||..|.:...               ||:.:.|::|:...|:|      .:.:::
Mouse  2428 ESEEKGDIEQKPESESILDVR---------------TGLMSDDVKSQGTTSSK------SENEIA 2471

  Fly   376 DPSLYESIRREERAEERQVELAEERRRKKDQEQQKRD---------------------------- 412
            ..||..::    ...|.|.::.|.:|:..:...:..|                            
Mouse  2472 SFSLEPTL----PGVESQHQITEGKRKNHEHISKTHDIAQSEIRAVQLSYLYLGAMKSLSALLGC 2532

  Fly   413 ---QELL------------KEAPSSP--------RALTQNIFDEVLKTRLHAIRAQESLLQQKLE 454
               .|||            .:..|||        ||..|.:...::|..:.....:.:|....||
Mouse  2533 SKYAELLLIPKVLAENGHNSDCASSPVVHEDVEMRAALQFLMRHMVKRAVMRSPIKRALGLADLE 2597

  Fly   455 ELQTREQEL--------QLAEQRVQTLERQMQEKLLQQEKHTCSCRQPIAPPIPPRKPAKSHHDD 511
            ..|....:|        |...:..|.:::|.:|....|:..|.....|.|....... :.|..|.
Mouse  2598 RAQAMIYKLVVHGLLEDQFGGKIKQEIDQQAEESDQAQQAQTPVTTSPSASSTTSFM-SSSLEDT 2661

  Fly   512 TYCTIELNET-------SPTVAKLNL------------------------ATLPAPKSLNTLRKV 545
            |..|..:.:|       ||.|..|:|                        ::|||..|....|:.
Mouse  2662 TTATTPVTDTETVPASESPGVMPLSLLRQMFSSYPTTTVLPTRRAQTPPISSLPASPSDEVGRRQ 2726

  Fly   546 TFKSPQKFVTYGIEN--MPPPAVKPAVNPPPTGVP---MQMSVS----------SNDSGDSQASS 595
            :..||....|.....  :..|:.:.:.:|||..:.   ::|..|          :...|::.|.|
Mouse  2727 SLTSPDSQSTRPANRTALSDPSSRLSTSPPPPAIAVPLLEMGFSLRQIAKAMEATGARGEADAQS 2791

  Fly   596 TRRKSILSLFGLSR-GSKATSKSLPSVNQVAQAAATRVQRPPLAVKPPITQEQPAEVPPVANLWT 659
            .   ::|:::.:.. |.:...:..||....::..|| |.........|...:.|.::|...   .
Mouse  2792 I---TVLAMWMIEHPGHEDEEEPQPSSTADSRHGAT-VLGSGGKSNDPCYLQSPGDIPSAD---A 2849

  Fly   660 KEQKKQAFELLAAMNAAEREASGGGVVGSGPGGARRQH----------LRQSVRERNSTLQRNRM 714
            .|.::...|....::..|..|||.|....|.....|:|          .|.:...|:....||:.
Mouse  2850 AEMEEGFSESPDNLDHTENAASGSGPPTRGRSTVTRRHKFDLAARTLLARAAGLYRSVQAHRNQS 2914

  Fly   715 RR 716
            ||
Mouse  2915 RR 2916

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nek2NP_572415.1 STKc_Nek2 18..281 CDD:270857
S_TKc 19..281 CDD:214567
Herc1XP_006511166.1 ATS1 374..731 CDD:227511
SPRY_HERC1 2039..2196 CDD:293939
UBA_HERC1 2760..2803 CDD:270584 6/45 (13%)
WD40 3448..3799 CDD:392136
WD40 repeat 3456..3499 CDD:293791
WD40 repeat 3513..3548 CDD:293791
WD40 repeat 3610..3648 CDD:293791
WD40 repeat 3653..3689 CDD:293791
WD40 repeat 3697..3736 CDD:293791
WD40 repeat 3774..3810 CDD:293791
ATS1 4022..4370 CDD:227511
HECTc 4497..4865 CDD:238033
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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