DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7g and Grid2

DIOPT Version :10

Sequence 1:NP_001368933.1 Gene:Ir7g / 31694 FlyBaseID:FBgn0029968 Length:607 Species:Drosophila melanogaster
Sequence 2:NP_077355.2 Gene:Grid2 / 79220 RGDID:68368 Length:1007 Species:Rattus norvegicus


Alignment Length:474 Identity:103/474 - (21%)
Similarity:168/474 - (35%) Gaps:123/474 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   207 HNLNGCPLIVLARKVSPFLDLDEG----QRELRGLEGRLLQELSRRMNFSIQFSGLQDQL----K 263
            :|:.|..|.|:.....||:.:.|.    .::.:|....:|..||..:.|:.:.....|..    :
  Rat   436 NNMRGVVLRVVTVLEEPFVMVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQ 500

  Fly   264 NRTTWTEKQLLQKLVQER----IAHLAIGYVRKRIQYATNLTPVFPHYSNRVVGCLLLNAHNLTS 324
            ...||  ..|:.:||.:|    |:.|.|...|:.:   .:.|..:..||   ||.||..|.....
  Rat   501 EDGTW--NGLVGELVFKRADIGISALTITPDRENV---VDFTTRYMDYS---VGVLLRRAEKTVD 557

  Fly   325 LEIWSFPFQALTWICLVFSFLSISCLALLHXRGAGDRLALVLAVYAASLGLPIDPP--------- 380
            :.....||....|.|:                 ||..|.:.|.||..:.   ::||         
  Rat   558 MFACLAPFDLSLWACI-----------------AGTVLLVGLLVYLLNW---LNPPRLQMGSMTS 602

  Fly   381 -------------------ERP----SLQLLFASWLIFGLIVRSMYSALLFFILRYHLHQRLPGN 422
                               |.|    :.:::..:|.:|.|||.|.|:|.|...|.....:....:
  Rat   603 TTLYNSMWFVYGSFVQQGGEVPYTTLATRMMMGAWWLFALIVISSYTANLAAFLTITRIESSIQS 667

  Fly   423 LQDL---THGDYAAVMGRTTLQDLREVPSLQDLLGLKSVIVTSERE---EEVLRTLDRC------ 475
            ||||   |...|..|:.....|.:|       :.||...    ||:   .::.|.::|.      
  Rat   668 LQDLSKQTDIPYGTVLDSAVYQHVR-------MKGLNPF----ERDSMYSQMWRMINRSNGSENN 721

  Fly   476 TLREGAGSHPLFFG---LISQDALLHLTQRGHRAGAYHIIPQDVLEQQLAIYLQKHSHLASHLDH 537
            .|...||...:.:|   .:...|:|..........:::.:...|.::...|.||..|........
  Rat   722 VLESQAGIQKVKYGNYAFVWDAAVLEYVAINDPDCSFYTVGNTVADRGYGIALQHGSPYRDVFSQ 786

  Fly   538 LVMSIRSVG----LVHHW---AGQMASERYFRSRFLYREKRIRQ-------PDLWAVY-ILTAGL 587
            .::.::..|    |.|.|   .||..         ||.....:|       ..|..|: ||.||:
  Rat   787 RILELQQSGDMDILKHKWWPKNGQCD---------LYSSVDAKQKGGALDIKSLAGVFCILAAGI 842

  Fly   588 YLLSLVVFICELLASRRAG 606
             :||.::.:.|...|||.|
  Rat   843 -VLSCLIAVLETWWSRRKG 860

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7gNP_001368933.1 None
Grid2NP_077355.2 Interaction with CBLN1 homotrimer. /evidence=ECO:0000250|UniProtKB:O43424 24..345
Periplasmic_Binding_Protein_type1 28..429 CDD:471960
PBP2_iGluR_delta_2 440..806 CDD:270449 84/404 (21%)
Interaction with AP4M1. /evidence=ECO:0000269|PubMed:14572453 921..991
PDZ-binding. /evidence=ECO:0000250 1005..1007
Blue background indicates that the domain is not in the aligned region.

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